Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75500 434 / 3e-152 WAT1 Walls Are Thin 1 (.1.2) AT3G53210 301 / 3e-100 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 285 / 3e-94 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G30420 167 / 3e-48 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 156 / 4e-44 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G45870 154 / 2e-43 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08290 151 / 4e-42 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G07050 145 / 5e-40 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G45370 141 / 2e-38 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT1G21890 140 / 6e-38 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024301 [exp] 436 / 3e-152 AT1G75500 575 / 0.0 Walls Are Thin 1 (.1.2) Lus10041801 [exp] 333 / 1e-113 AT1G75500 365 / 6e-126 Walls Are Thin 1 (.1.2) Lus10027251 [exp] 296 / 7e-98 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10038959 [exp] 294 / 1e-97 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10028351 [exp] 238 / 6e-77 AT3G53210 311 / 1e-105 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10037284 [exp] 169 / 2e-49 AT5G45370 475 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10035693 [exp] 169 / 1e-48 AT5G45370 502 / 1e-178 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10022187 [exp] 163 / 8e-47 AT4G08300 270 / 7e-88 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023211 [exp] 162 / 9e-47 AT4G30420 378 / 1e-130 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G029100 [exp] 476 / 5e-169 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.005G233600 [exp] 470 / 1e-166 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.007G017800 [exp] 329 / 3e-111 AT1G75500 414 / 4e-144 Walls Are Thin 1 (.1.2) Potri.015G042900 [exp] 311 / 2e-104 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.008G165600 [exp] 176 / 6e-52 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 171 / 1e-49 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 166 / 6e-48 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.018G099500 [exp] 162 / 3e-46 AT4G30420 402 / 7e-140 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 162 / 6e-46 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 161 / 6e-46 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10010647 pacid=23143648 polypeptide=Lus10010647 locus=Lus10010647.g ID=Lus10010647.BGIv1.0 annot-version=v1.0 ATGGCTGACGCCGGTGGAAGCTCCTCTGGAGGGAGAATGTGGTGCTCTGTCCCTGAAAAGATGCAGCTTCACTTGGCCATGTTGGCCTTGCAGTTTGGTT ACGCGGGTTTCCATGTCGTATCCAGAGCTGCTCTCAACATGGGCATCAGTATGCTTGTCTTCCCTGTTTACAGAAACATCATAGCTCTCCTCCTCCTCCT TCCCTTCGCTTATTTCCTTGAAAAGAAGGAAAGACCAGCCATCACTCTCAATCTCCTTGTCCAGTTCTTCTTCTTGGCTCTTATTGGGATCGAGAAAGTG AGATTCGACAGAAAGGACGGGATTGCAAAGGCGGTCGGAACAGCGTGCTGCGTGGCCGGAGCCTCCGTCATCACTCTGTACAAGGGCCCAACGATATACA CCCCAACTCCACCGCTGACGAACCTGATAGGTAATTCTGCGTCCTCCTCCTCTGCCGTACCCAGCTACGTTTCGAAGATTGGAGAGGACGGTAGCGGGAC AACAAGCTGGACGTTGGGGTGCATTTACCTGATCGGACACTGCCTTTGCTGGTCGGGATGGTTGGTTCTGCAGGCGCCGGTGATCAAGAAATACCCGGCG AGGCTGTCGGTGACTTCGTACACATGCTTCTTTGGACTGATTCAGTTCTTAGTGATCGCCGGGTTTATGGAACGCGATGCACAAGCTTGGATATTCCACT CTGGTGGTGAACTCTTCACCATTCTTTACGCGGGAGTAGTGGCATCTGGGATAGCATTCGCTGTACAGATATGGTGCATCGACAGAGGGGGGCCTGTGTT CGTTGCAGTTTATCAGCCAGTTCAGACCCTTATTGTTGCTATTATGGCCTCCTTTGCTCTCGGAGAGGAGTTCTTCCTTGGAGGGATCATTGGGGCAGTC CTGATCATAATAGGACTGTACCTCGTGCTGTGGGGCAAGAGCCAAGAGAGGAAATTCGCAACTCTTGACAAGGCAGCCATCCAGTCAGGACATGACCAGC AGGGAAGTAACAACAACAACAACAACAGCAACAGGATACACGCTCACGTCAAGTCATCTCTCGCCCAGCCACTGCTCCCTCCTTCTGAAAACGTTTGA
AA sequence Show only first row Show all	>Lus10010647 pacid=23143648 polypeptide=Lus10010647 locus=Lus10010647.g ID=Lus10010647.BGIv1.0 annot-version=v1.0 MADAGGSSSGGRMWCSVPEKMQLHLAMLALQFGYAGFHVVSRAALNMGISMLVFPVYRNIIALLLLLPFAYFLEKKERPAITLNLLVQFFFLALIGIEKV RFDRKDGIAKAVGTACCVAGASVITLYKGPTIYTPTPPLTNLIGNSASSSSAVPSYVSKIGEDGSGTTSWTLGCIYLIGHCLCWSGWLVLQAPVIKKYPA RLSVTSYTCFFGLIQFLVIAGFMERDAQAWIFHSGGELFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLIVAIMASFALGEEFFLGGIIGAV LIIIGLYLVLWGKSQERKFATLDKAAIQSGHDQQGSNNNNNNSNRIHAHVKSSLAQPLLPPSENV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10010647 [exp]	0	1
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10007671 [exp]	2.8	0.9194
AT2G32240			unknown protein		Lus10010464 [exp]	4.2	0.9074
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10036586 [exp]	7.0	0.9066
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Lus10043092 [exp]	7.7	0.9151
AT5G14550			Core-2/I-branching beta-1,6-N-...		Lus10022242 [exp]	8.6	0.9217
AT1G64650			Major facilitator superfamily ...		Lus10000337 [exp]	9.5	0.9077
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10024301 [exp]	10.0	0.8920
AT2G23360			Plant protein of unknown funct...		Lus10004994 [exp]	11.0	0.9181
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10006612 [exp]	11.2	0.8991
AT1G35710			Protein kinase family protein ...		Lus10003612 [exp]	14.0	0.9011

Compare expression of checked genes

Lus10010647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.