Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03770 176 / 4e-49 Leucine-rich repeat protein kinase family protein (.1.2) AT5G14210 136 / 3e-35 Leucine-rich repeat protein kinase family protein (.1) AT2G02780 131 / 2e-33 Leucine-rich repeat protein kinase family protein (.1) AT1G14390 112 / 7e-27 Leucine-rich repeat protein kinase family protein (.1) AT5G63410 95 / 4e-21 Leucine-rich repeat protein kinase family protein (.1) AT5G44700 90 / 3e-19 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17750 81 / 2e-16 AtPEPR2 PEP1 receptor 2 (.1) AT1G33670 79 / 8e-16 Leucine-rich repeat (LRR) family protein (.1) AT5G46330 79 / 1e-15 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G41820 79 / 1e-15 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005689 [exp] 234 / 3e-70 AT3G03770 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10020303 [exp] 211 / 8e-62 AT3G03770 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034873 [exp] 142 / 3e-37 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033407 [exp] 140 / 2e-36 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035225 [exp] 136 / 5e-35 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013262 [exp] 133 / 4e-34 AT1G14390 632 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032058 [exp] 131 / 2e-33 AT5G14210 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030785 [exp] 127 / 4e-32 AT1G14390 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032059 [exp] 125 / 3e-31 AT5G14210 870 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G039000 [exp] 238 / 8e-72 AT3G03770 933 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G064300 [exp] 207 / 2e-60 AT3G03770 896 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.008G014300 [exp] 186 / 1e-52 AT3G03770 692 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G147700 [exp] 145 / 2e-38 AT1G14390 675 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G093100 [exp] 137 / 3e-35 AT5G14210 681 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G333300 [exp] 127 / 5e-32 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G095600 [exp] 121 / 4e-30 AT5G14210 720 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G147300 [exp] 86 / 5e-18 AT3G28040 1156 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.012G088900 [exp] 85 / 1e-17 AT4G20140 700 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.018G144700 [exp] 83 / 6e-17 AT1G07390 362 / 5e-109 receptor like protein 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10010648 pacid=23141658 polypeptide=Lus10010648 locus=Lus10010648.g ID=Lus10010648.BGIv1.0 annot-version=v1.0 ATGGGGTTGCAACACTATGGTGTATCAATACTACTAGTTCCCTTCATCACATTACTCCTATTAACCAATGACTCGGACCAAACCTCATCCTCTGATCAGG CTCAAACACTCCTCGATATTCAGCGCATCCTCAACTACCCTTCTGCTTTAACCACCTGGAACCACACCACTGATTTCTGCAACACATACCCAAGTCCTGA TGTCATTGTAATATGCCAACAGAATAGCGTTATCCAGCTCTACATCTTCGGCAACGTCAGGGGAACATCAAAGCCTCCACCTATCAACAACAAGGACTTC TCTATGGAACTTTTGGTGACAACCCTTGCCACCCTTCCAAATCTCCAATCCCTCGTACTCTCTTCTCTAGGTTTAAGTGGTACATTGCCTGCAAAGATAT CCCTCCTGTCAGCAGTGACAGAACTGAATCTCAATTCTAACTATCTCACCGATGTCCTGCCTCAAGATCTCTCATCGTTACGTAGCCTACGTTCACTTTC CCTCGATGACAATTTGTTTACTGGAGAGCTTCCGGACTCGTTATTCCGCTCGTTCCCAGTTCTGACTTCCCTCAGTATAAAGAACAACACTTTCAACGGG ACATTGCCGAATTCGATCATCCATTCGGAGACCATCAAAGTTCTCCGAATTTCGCGCAATAGATTTCACGGAGAAGTCCCGGATTTCAGCGGATTGACTA ATCTTGAGGTGGTTGATCTGGATCACAACAACTTTGAAGGTGAGTTTCCTTATTATTTGCTGGCAATGCCTGGTATTACCCATTTGGAAGTTTCTAGCAA CAAGTTGACAGGAGAACTGAAGGAGGATCAAAAGTGTAGTGGCGGGGTTGAGTTTGTGGATTTGTCGTTCAATTTTTTGACGGGACATCTTCCCAAGTGT CTTGCTGTCAAAAATGATAGCAGAACTGTTCTGTTTGCTTGGAACTGTCTTGTGGGAGATGAAGGAACTCAACAGCACCCAATTTCATATTGTAACAACC AAACTTCAATAGCAGCCGGGCGTCTTAATCCACTACTCGTGACAATGGTAGCTTTGTGGATTGTTAGTGGGATTGTGATTGGTGTTTGA
AA sequence Show only first row Show all	>Lus10010648 pacid=23141658 polypeptide=Lus10010648 locus=Lus10010648.g ID=Lus10010648.BGIv1.0 annot-version=v1.0 MGLQHYGVSILLVPFITLLLLTNDSDQTSSSDQAQTLLDIQRILNYPSALTTWNHTTDFCNTYPSPDVIVICQQNSVIQLYIFGNVRGTSKPPPINNKDF SMELLVTTLATLPNLQSLVLSSLGLSGTLPAKISLLSAVTELNLNSNYLTDVLPQDLSSLRSLRSLSLDDNLFTGELPDSLFRSFPVLTSLSIKNNTFNG TLPNSIIHSETIKVLRISRNRFHGEVPDFSGLTNLEVVDLDHNNFEGEFPYYLLAMPGITHLEVSSNKLTGELKEDQKCSGGVEFVDLSFNFLTGHLPKC LAVKNDSRTVLFAWNCLVGDEGTQQHPISYCNNQTSIAAGRLNPLLVTMVALWIVSGIVIGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03770			Leucine-rich repeat protein ki...		Lus10010648 [exp]	0	1
					Lus10031653 [exp]	2.4	0.6815
					Lus10028652 [exp]	4.5	0.6974
AT3G04620		DAN1	D NUCLDUO1-ACTIVATEEIC ACID BI...		Lus10006564 [exp]	8.7	0.6757
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10005194 [exp]	14.4	0.6422
					Lus10004853 [exp]	16.1	0.6422
					Lus10000273 [exp]	17.7	0.6422
AT1G17930			Aminotransferase-like, plant m...		Lus10001981 [exp]	19.1	0.6422
AT1G04670			unknown protein		Lus10002298 [exp]	20.4	0.6422
					Lus10027667 [exp]	21.6	0.6422
AT5G51030			NAD(P)-binding Rossmann-fold s...		Lus10032524 [exp]	22.8	0.6422

Compare expression of checked genes

Lus10010648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.