Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03890 405 / 4e-142 FMN binding (.1.2) AT3G21140 81 / 1e-16 Pyridoxamine 5'-phosphate oxidase family protein (.1) AT1G51560 76 / 4e-15 Pyridoxamine 5'-phosphate oxidase family protein (.1) AT3G21200 55 / 2e-08 PGR7 proton gradient regulation 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013617 [exp] 508 / 2e-178 AT3G03890 363 / 6e-122 FMN binding (.1.2) Lus10034828 [exp] 76 / 6e-15 AT1G51560 508 / 0.0 Pyridoxamine 5'-phosphate oxidase family protein (.1) Lus10033378 [exp] 75 / 8e-15 AT1G51560 483 / 9e-171 Pyridoxamine 5'-phosphate oxidase family protein (.1) Lus10035751 [exp] 49 / 3e-06 AT3G21200 362 / 6e-126 proton gradient regulation 7 (.1) Lus10037330 [exp] 49 / 3e-06 AT3G21200 368 / 6e-128 proton gradient regulation 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G035200 [exp] 440 / 7e-156 AT3G03890 452 / 4e-161 FMN binding (.1.2) Potri.013G057700 [exp] 431 / 4e-153 AT3G03890 429 / 6e-153 FMN binding (.1.2) Potri.008G006400 [exp] 76 / 3e-15 AT1G51560 533 / 0.0 Pyridoxamine 5'-phosphate oxidase family protein (.1) Potri.010G252300 [exp] 75 / 8e-15 AT1G51560 561 / 0.0 Pyridoxamine 5'-phosphate oxidase family protein (.1) Potri.010G250200 [exp] 61 / 2e-10 AT3G21200 419 / 3e-148 proton gradient regulation 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0336 [flax] [poplar] FMN-binding PF01243 [flax] [poplar] Putative_PNPOx Pyridoxamine 5'-phosphate oxidase CL0336 [flax] [poplar] PF10615 [flax] [poplar] DUF2470 Protein of unknown function (DUF2470)
Representative CDS sequence Show only first row Show all	>Lus10010649 pacid=23141665 polypeptide=Lus10010649 locus=Lus10010649.g ID=Lus10010649.BGIv1.0 annot-version=v1.0 ATGATGGCATCAGCTGGTTGTTGCACAATGAGGGCAGCTGCAGTAGCGTCAACCAGGCTCCATCTCCCTTCTTATTCCTCTCCGTTTCTCCAACCAAACA TCTCCTCTCCATCACTCCCCTCTATTCTCTCTTCTTCCATCTCCTTCTCTCCTTCTACTCGTCGATCTCTCGCCATGTCTGCAGCTCCACCTCAGTCCTC CTCTCCTCCTAAGGCTGCATCTGCTGGGGGAATTGATGGCGAGGAGAATCTTTTAATGTTGATCAAAACTCACCAGGAAACTGCTGCTCGGCTTCCCCCA GTTGAGGAAATCAGGACAGTCCTTGGCCATAGTGTGCGAGGCATGCTCTCAACCTTCTCTCAGAAATACGATGGTTATCCGTCTGGATCGTTGCTTGATT TTGCATCTGATGTAGATGGCTCTATAATCTTGGCTGTCAGTTCCTTGTCAGTTCATTCAAAGGACCTGTCAGCTAATCCAAAGTGCTCCTTGCTTGTTGC TAGAGATCCCGAGGATAGGAATGATCTGGTTATCACTGTGCATGGGGATGCTATTCCTGTCTCTAAGCAAGATACAGCTACCACGAGAACTGCATATTTG GCCAAACATCCTAATGCATTCTGGGTTGACTTTGGGGACTTCCAATTTTTAAGGATTGAGCCAAAGGTAGTGCGATATGTGTCAGGAGTTGCAACTGCAT TGCTTCAGTCTGGAGAGTTTACCAAAGACGAGTTTCAATCTGCAAAAGTGGATCCTATATCCCAATTTGCAAAGCCTATTACATCCCACATGAACAGAGA TCATGGTGAAGATACAAAACTGATTGTGAAACACTCAACTTCAATTCCGGTGGATTCTGCTTATATGCTAGATGTGGATAGTTTTGGATTCAATGTCAAG GCTGTTTATCAGGGTAAGACTTACAAGCTCAGAATTCCTTTCCCTAGGCGTGCAGAAGATAGAAAGGATGTGAAAACCTTAATTGTGGAAATGCTACAAG CTAGCAGCGGCCAGAGCTAA
AA sequence Show only first row Show all	>Lus10010649 pacid=23141665 polypeptide=Lus10010649 locus=Lus10010649.g ID=Lus10010649.BGIv1.0 annot-version=v1.0 MMASAGCCTMRAAAVASTRLHLPSYSSPFLQPNISSPSLPSILSSSISFSPSTRRSLAMSAAPPQSSSPPKAASAGGIDGEENLLMLIKTHQETAARLPP VEEIRTVLGHSVRGMLSTFSQKYDGYPSGSLLDFASDVDGSIILAVSSLSVHSKDLSANPKCSLLVARDPEDRNDLVITVHGDAIPVSKQDTATTRTAYL AKHPNAFWVDFGDFQFLRIEPKVVRYVSGVATALLQSGEFTKDEFQSAKVDPISQFAKPITSHMNRDHGEDTKLIVKHSTSIPVDSAYMLDVDSFGFNVK AVYQGKTYKLRIPFPRRAEDRKDVKTLIVEMLQASSGQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03890			FMN binding (.1.2)		Lus10010649 [exp]	0	1
AT1G33270			Acyl transferase/acyl hydrolas...		Lus10020983 [exp]	1.0	0.8603
AT5G36290			Uncharacterized protein family...		Lus10026995 [exp]	6.6	0.7871
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10025605 [exp]	7.5	0.7908
AT5G35460			unknown protein		Lus10017161 [exp]	9.6	0.8142
AT1G51720			Amino acid dehydrogenase famil...		Lus10006872 [exp]	10.5	0.8197
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10019411 [exp]	10.8	0.8206
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Lus10039576 [exp]	13.0	0.7319
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10039323 [exp]	14.7	0.7904
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10040516 [exp]	17.6	0.7874
AT5G35390			Leucine-rich repeat protein ki...		Lus10022946 [exp]	19.6	0.7548

Compare expression of checked genes

Lus10010649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.