Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55340 117 / 7e-34 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT3G03880 95 / 3e-25 Protein of unknown function (DUF1639) (.1) AT4G20300 77 / 2e-17 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010312 [exp] 113 / 3e-32 AT1G55340 254 / 1e-86 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10013616 [exp] 106 / 4e-31 AT1G55340 111 / 1e-32 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10038379 [exp] 67 / 3e-14 AT4G20300 188 / 1e-58 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10036240 [exp] 68 / 6e-14 AT4G20300 217 / 3e-67 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10013412 [exp] 50 / 2e-08 AT1G55340 165 / 1e-52 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G035300 [exp] 123 / 5e-36 AT1G55340 232 / 9e-78 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.001G004000 [exp] 120 / 4e-35 AT1G55340 268 / 4e-92 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.003G221000 [exp] 119 / 1e-34 AT1G55340 261 / 3e-89 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.013G057600 [exp] 114 / 1e-32 AT1G55340 212 / 1e-69 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.018G059200 [exp] 89 / 3e-22 AT1G55340 133 / 3e-38 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.006G233100 [exp] 84 / 4e-20 AT1G55340 130 / 9e-37 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.003G157500 [exp] 77 / 2e-17 AT4G20300 201 / 2e-61 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.001G073400 [exp] 77 / 2e-17 AT4G20300 226 / 3e-71 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.010G122700 [exp] 41 / 6e-05 AT1G25370 110 / 1e-28 Protein of unknown function (DUF1639) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07797 [flax] [poplar] DUF1639 Protein of unknown function (DUF1639)
Representative CDS sequence Show only first row Show all	>Lus10010650 pacid=23141673 polypeptide=Lus10010650 locus=Lus10010650.g ID=Lus10010650.BGIv1.0 annot-version=v1.0 ATGGCGGATTCAATAGAAAAATCACTTCTCGGATTGACCGATTCGTCGTCTCCGTGTTTGGGTGGTGGGTTAGGGGGATCGGATGTGAATGCTTGTAAGA AAGCGAAAGAAGAAGAGAAATCATCAGGAGGAGGAGGAGAAAAGAAGAAGGTAGTTTGGCCAAAGCTGTATGTAAGCTTATCAAGTAAAGAGAAAGAAGA AGACTTTATGGCTATGAAAGGATGTAAGCTTCCTCAGAGACCCAAGAAGAGACCCAAACTCATCCAAAGAACCGTTCTTGCGGTGTGTCCTGGAGCATGG TTGACTGATATGTGCCAAGAGAGATATGAAGTGAGGGAGAAGAAGAGTTCCAAGAAGAGACCAACAGGGCTGAAAGCAATGGGGAGTATGGATCATAGTG ATTCAGAATGA
AA sequence Show only first row Show all	>Lus10010650 pacid=23141673 polypeptide=Lus10010650 locus=Lus10010650.g ID=Lus10010650.BGIv1.0 annot-version=v1.0 MADSIEKSLLGLTDSSSPCLGGGLGGSDVNACKKAKEEEKSSGGGGEKKKVVWPKLYVSLSSKEKEEDFMAMKGCKLPQRPKKRPKLIQRTVLAVCPGAW LTDMCQERYEVREKKSSKKRPTGLKAMGSMDHSDSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55340			Protein of unknown function (D...		Lus10010650 [exp]	0	1
AT2G29590			Thioesterase superfamily prote...		Lus10018205 [exp]	1.4	0.9062
AT1G15270			Translation machinery associat...		Lus10037543 [exp]	1.4	0.9242
AT4G33740			unknown protein		Lus10012453 [exp]	2.0	0.8958
AT1G04290			Thioesterase superfamily prote...		Lus10004288 [exp]	3.9	0.8872
AT3G03070			NADH-ubiquinone oxidoreductase...		Lus10039147 [exp]	4.0	0.8729
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10002228 [exp]	4.9	0.8988
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10017725 [exp]	6.0	0.8722
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10026239 [exp]	7.7	0.8821
AT3G62790			NADH-ubiquinone oxidoreductase...		Lus10021691 [exp]	7.7	0.8187
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10014523 [exp]	8.1	0.8336

Compare expression of checked genes

Lus10010650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.