Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18100 206 / 4e-66 CSD3 copper/zinc superoxide dismutase 3 (.1.2) AT1G08830 185 / 6e-58 CSD1 copper/zinc superoxide dismutase 1 (.1.2) AT2G28190 172 / 4e-52 CZSOD2, CSD2 copper/zinc superoxide dismutase 2 (.1) AT1G12520 67 / 4e-13 ATCCS, CCS1 copper chaperone for SOD1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013615 [exp] 249 / 1e-80 AT5G18100 209 / 7e-68 copper/zinc superoxide dismutase 3 (.1.2) Lus10001719 [exp] 188 / 1e-57 AT1G08830 250 / 6e-85 copper/zinc superoxide dismutase 1 (.1.2) Lus10004139 [exp] 178 / 3e-55 AT1G08830 253 / 4e-88 copper/zinc superoxide dismutase 1 (.1.2) Lus10016155 [exp] 172 / 4e-52 AT2G28190 308 / 1e-107 copper/zinc superoxide dismutase 2 (.1) Lus10021410 [exp] 171 / 1e-51 AT2G28190 306 / 5e-107 copper/zinc superoxide dismutase 2 (.1) Lus10007031 [exp] 58 / 4e-09 AT1G12520 399 / 5e-140 copper chaperone for SOD1 (.1.2.3) Lus10006686 [exp] 57 / 5e-09 AT1G12520 393 / 6e-138 copper chaperone for SOD1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G056900 [exp] 226 / 5e-74 AT5G18100 239 / 4e-82 copper/zinc superoxide dismutase 3 (.1.2) Potri.019G035800 [exp] 224 / 2e-73 AT5G18100 237 / 3e-81 copper/zinc superoxide dismutase 3 (.1.2) Potri.013G031100 [exp] 194 / 1e-61 AT1G08830 261 / 6e-91 copper/zinc superoxide dismutase 1 (.1.2) Potri.005G044400 [exp] 191 / 3e-60 AT1G08830 266 / 5e-93 copper/zinc superoxide dismutase 1 (.1.2) Potri.004G216700 [exp] 178 / 2e-54 AT2G28190 267 / 2e-91 copper/zinc superoxide dismutase 2 (.1) Potri.009G005100 [exp] 168 / 1e-50 AT2G28190 252 / 2e-85 copper/zinc superoxide dismutase 2 (.1) Potri.003G118400 [exp] 57 / 6e-09 AT1G12520 393 / 8e-138 copper chaperone for SOD1 (.1.2.3) Potri.001G113800 [exp] 57 / 6e-09 AT1G12520 377 / 2e-131 copper chaperone for SOD1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00080 [flax] [poplar] Sod_Cu Copper/zinc superoxide dismutase (SODC)
Representative CDS sequence Show only first row Show all	>Lus10010651 pacid=23141659 polypeptide=Lus10010651 locus=Lus10010651.g ID=Lus10010651.BGIv1.0 annot-version=v1.0 ATGGCAGGAGCTGGAACCGGAGTGACGACGACGGTGAAAGCCGTGGCGATCATCGCCGGAGATCCCAACGTTAGAGGCTTTATTCAATTTATCCAACAAC CCAATGGATCTACCCATGTGGCTGGGAAGATAACGGGACTTTCTCCTGGCTTTCATGGCTTCCATATTCATGCTCTTGGTGACACCACTAATGGCTGCAC TTCCACAGGACCTCACTTCAATCCATTGCAGAAGAGCCATGGATCTCCATGGGACCATGAACGCCACGCCGGTGACTTGGGAAACATCCTTGCAAATGAA GATGGAGTTGCTCAGATTTCAATCGAGGATAGTCAGATACCGCTAGGAGGGCCACATTCCATACTAGGGAGGGCTGTTGTGGTGCATGCTGATCCTGATG ATTTGGGAAAAGGTGGACACGAGCTTAGCAAAACGACTGGAAATGCGGGTGCAAGAGTTGGCTGTGGTAACCCAGGATGTTCTTCTTCCTCACCTGGGAT TGTCATTTGCACTTCCTCTTTCAATCGCACCGTTCATGTGTGCATAAAAATTAAAATATTTTCTGCATTCATGCAGGCATCATTGGTCTTCAATCATCTG TGTAAGGCTGGCGGTATATTGTTCCCGGAGGGAAGGAGGACAAGACTCAAAGAAGCTGTTTTTCAAGTTTCGACGGCAAAGTTCATGGGAATTTTTATGG ATATGTGTCTGCCCATTGCCTTGATGAAGAAAAAGTGTGACCTCCATTGCGGTCATGATGGCTCTCGTGATCCAGGCACATGCCCTGATGAAGCCGAACC AAGAATTAATAGTCACACACAAGCCTTGATCGAGACAAGCCGTGAGATTGAGATCATTTATATGGTCTGCCTCGCGTTTGCCGATGACTGTGACCATGAA TCTTTCAGGGATACTTCTCTTGGTGGTGACGGGCATCCATTCCTACAAGGACCTCAGGATGCAGGAGCTACTGCAGTGGCAACTTGGTACACAGTTACGA ATAAGATGAAGAAAAAGTGTGATCTGTATTGCTCGGAGACAATTCAGGGCTCTAACTTCAATGGCTACGACAGTCAAGAATCCTAA
AA sequence Show only first row Show all	>Lus10010651 pacid=23141659 polypeptide=Lus10010651 locus=Lus10010651.g ID=Lus10010651.BGIv1.0 annot-version=v1.0 MAGAGTGVTTTVKAVAIIAGDPNVRGFIQFIQQPNGSTHVAGKITGLSPGFHGFHIHALGDTTNGCTSTGPHFNPLQKSHGSPWDHERHAGDLGNILANE DGVAQISIEDSQIPLGGPHSILGRAVVVHADPDDLGKGGHELSKTTGNAGARVGCGNPGCSSSSPGIVICTSSFNRTVHVCIKIKIFSAFMQASLVFNHL CKAGGILFPEGRRTRLKEAVFQVSTAKFMGIFMDMCLPIALMKKKCDLHCGHDGSRDPGTCPDEAEPRINSHTQALIETSREIEIIYMVCLAFADDCDHE SFRDTSLGGDGHPFLQGPQDAGATAVATWYTVTNKMKKKCDLYCSETIQGSNFNGYDSQES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18100		CSD3	copper/zinc superoxide dismuta...		Lus10010651 [exp]	0	1
AT5G65880			unknown protein		Lus10039652 [exp]	1.4	0.8966
AT1G16670			Protein kinase superfamily pro...		Lus10028149 [exp]	1.7	0.8974
AT4G37020			unknown protein		Lus10000435 [exp]	3.9	0.8897
AT5G60335			Thioesterase superfamily prote...		Lus10028483 [exp]	4.0	0.8708
AT3G16190			Isochorismatase family protein...		Lus10037581 [exp]	4.2	0.8680
AT1G06980			unknown protein		Lus10006211 [exp]	6.0	0.8876
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10026912 [exp]	7.1	0.8704
AT5G26040		HDA2	histone deacetylase 2 (.1.2)		Lus10024990 [exp]	7.2	0.8768
AT1G48175		TAD1, EMB2191	tRNA adenosine deaminase 1, em...		Lus10009163 [exp]	7.5	0.8805
AT4G01995			unknown protein		Lus10012004 [exp]	8.1	0.8482

Compare expression of checked genes

Lus10010651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.