Plant FIBer expression Database

Lus10010653 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G64850 188 / 8e-62 Calcium-binding EF hand family protein (.1)
AT4G37445 44 / 5e-06 unknown protein
AT2G41200 39 / 0.0007 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013613
[exp]
273 / 3e-95 AT1G64850 244 / 3e-84 Calcium-binding EF hand family protein (.1)
Lus10001408
[exp]
54 / 1e-09 AT4G37445 214 / 6e-72 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G072600
[exp]
196 / 7e-65 AT1G64850 250 / 3e-86 Calcium-binding EF hand family protein (.1)
Potri.007G051200
[exp]
42 / 3e-05 AT4G37445 160 / 7e-51 unknown protein
PFAM info
Representative CDS sequence
>Lus10010653 pacid=23141678 polypeptide=Lus10010653 locus=Lus10010653.g ID=Lus10010653.BGIv1.0 annot-version=v1.0
ATGGGCCAAGTCCTCGATAGGTTCCAAGGTAAGGAATGGAAAAGGAAGCAAGTGAAGTTGATAACTGACCGGGTATATGATCGAATCTGTTCTCAATCAG
GACGGTCTTATCTGACTTTTGACGATCTCTACATTGCTGTGTTGCTTGTCTTCAATGACATTAACAAGCGTTTGCCAGGTCCCCATTTCGATCCACCCTC
CAAAGACCGTGTCAGGGAGATCATTAAGGAATGTGATATCGACCTTGACGGAGGGCTTGACCGTGAAGAGTTTGCCAAGTTCATGAAGCAACTAACAGCA
GAGACACTTGTTGTAGTAAGTCAAGGACTTCTGGTCACCCTAGTTGTGGCACCAACGGTTGCAATGGCTACCAAAAGAGCCACAGAGGGTGTTCCCGGGG
TTGGCAAAGTTGTGCAGAAGGTTCCGACTTCAGTATTCGCCTCGCTCGTCACTCTTGCCGTTGTTTGGTTTCAGCACGCAGACCACGAAGCTGTGTAG
AA sequence
>Lus10010653 pacid=23141678 polypeptide=Lus10010653 locus=Lus10010653.g ID=Lus10010653.BGIv1.0 annot-version=v1.0
MGQVLDRFQGKEWKRKQVKLITDRVYDRICSQSGRSYLTFDDLYIAVLLVFNDINKRLPGPHFDPPSKDRVREIIKECDIDLDGGLDREEFAKFMKQLTA
ETLVVVSQGLLVTLVVAPTVAMATKRATEGVPGVGKVVQKVPTSVFASLVTLAVVWFQHADHEAV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G64850 Calcium-binding EF hand family... Lus10010653
[exp]
0 1
AT3G49870 ATARLA1C ADP-ribosylation factor-like A... Lus10012090
[exp]
2.0 0.8529
AT3G12800 SDRB, DECR short-chain dehydrogenase-redu... Lus10031746
[exp]
3.9 0.8560
AT2G42975 unknown protein Lus10020756
[exp]
6.0 0.8041
AT3G45620 Transducin/WD40 repeat-like su... Lus10034751
[exp]
6.2 0.8524
AT3G17020 Adenine nucleotide alpha hydro... Lus10016900
[exp]
6.5 0.8293
AT3G12800 SDRB, DECR short-chain dehydrogenase-redu... Lus10031170
[exp]
7.2 0.8503
AT1G33490 unknown protein Lus10039157
[exp]
8.0 0.8263
AT5G64210 AOX2 alternative oxidase 2 (.1) Lus10005372
[exp]
8.5 0.8484
AT2G24220 ATPUP5 purine permease 5 (.1.2) Lus10036272
[exp]
8.7 0.8501
AT1G27480 alpha/beta-Hydrolases superfam... Lus10018664
[exp]
9.2 0.8170

Lus10010653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.