Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03810 843 / 0 EDA30 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) AT3G30300 530 / 0 O-fucosyltransferase family protein (.1) AT1G04910 170 / 1e-45 O-fucosyltransferase family protein (.1) AT1G22460 168 / 7e-45 O-fucosyltransferase family protein (.1) AT3G02250 162 / 5e-43 O-fucosyltransferase family protein (.1) AT5G15740 160 / 2e-42 RRT1 O-fucosyltransferase family protein (.1) AT5G64600 159 / 1e-41 O-fucosyltransferase family protein (.1) AT3G26370 154 / 5e-40 O-fucosyltransferase family protein (.1) AT4G16650 151 / 8e-39 O-fucosyltransferase family protein (.1) AT4G38390 150 / 2e-38 RHS17 root hair specific 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013612 [exp] 1268 / 0 AT3G03810 843 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Lus10005094 [exp] 558 / 0 AT3G30300 887 / 0.0 O-fucosyltransferase family protein (.1) Lus10034356 [exp] 558 / 0 AT3G30300 895 / 0.0 O-fucosyltransferase family protein (.1) Lus10037830 [exp] 181 / 1e-49 AT1G04910 851 / 0.0 O-fucosyltransferase family protein (.1) Lus10017105 [exp] 175 / 1e-46 AT1G04910 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10032603 [exp] 172 / 2e-46 AT1G04910 845 / 0.0 O-fucosyltransferase family protein (.1) Lus10019196 [exp] 162 / 8e-43 AT5G15740 541 / 0.0 O-fucosyltransferase family protein (.1) Lus10034651 [exp] 156 / 4e-41 AT5G15740 754 / 0.0 O-fucosyltransferase family protein (.1) Lus10021717 [exp] 157 / 5e-41 AT5G15740 752 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G056200 [exp] 894 / 0 AT3G03810 845 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Potri.019G036600 [exp] 885 / 0 AT3G03810 885 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Potri.004G113200 [exp] 565 / 0 AT3G30300 886 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101600 [exp] 559 / 0 AT3G30300 917 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G316800 [exp] 181 / 7e-50 AT1G04910 847 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G057300 [exp] 180 / 2e-49 AT1G04910 828 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 175 / 1e-47 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 167 / 5e-45 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 160 / 4e-42 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 159 / 7e-42 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10010654 pacid=23141662 polypeptide=Lus10010654 locus=Lus10010654.g ID=Lus10010654.BGIv1.0 annot-version=v1.0 ATGATGCTGTTCAAATCGAGGATCAAATGGATAGTTCTGTTGGTGTTGATGCTATCCACCGGATCCCTAGTCGTTCATCTCTCAATTACCAAGTTCTCCG CCACTAATTTGGTTCAGTTCACTCCCGCCCCCGCTCTTCGCCTTGATTTCCCTTCTTCTCCTGGATCCAAGAGAGTTATAACTGTTAGAAACAAGAAGCT GTGGGGTCCTGTTAAGCCCTTGGAGTCATTGCAGCCTTTTGCCAACCCAAGAAGCGCCTACCCTGCTCCAAGTGAAAATAACAACGGTTACATATATGCA AAGCTTTATGGTGGGTTTTCAAAGATAAGATCTTCGATATGTGATCTTGTCACCATATCCAGGCTTCTAAATGCTACTCTTGTCATTCCAGAGATTCAAG ATAGTCTGCGCTCAAAAGGCATTAGTAACAAATTCAAGAGTTTTTCTTATCTCTATGATGAGGACCAGTTCATAGCTTCACTTAAAAATGATGTGAGGGT TGTGAAGAGCTTGCCCGAGAATTTGAAGGCAGCTAGGAAAAGGAACGAATTTCCCATCTTTAAGCCCAAAAGTTCTGCTACGATAAGTTTCTACGTCAAA GAAATTTTGCCTAAACTGAGGAAATCGGAAGTAGTTGGTCTGATTCTTGCTGATGGAGGCTGTCTGCAGTCAGTTCTTCCACCCAGCATGGCTGAGTTTC AGAGGCTAAGATGCCGAGTAGGCTTTCATGCACTTCAATTCCGCCAAGATCTTAAACTACTGGGCCATAGGATTGTTGATAGATTGCGACAATGGGGTCA GCCTTACATTGCATACCATCCTGGCTTAGATGTGCACTCTGAACTCATACAATATCGGAGGGCACAGTTGATCAAGAGAGGGATGCTTACTGACAAGCTT AGTGTTGAATCGCACATACGAAGAGACAATGGGTCATGCCCCCTAATGCCTGAAGAGGTTGGACTTGTTCTTCGAGCAATGGGCTACCGTCCTAATACAA TTATATATGTGGCTGGGTCTGAAACATTTGGTGGTCAACGACTTCTGATCCCCCTGCGTGCAATGTTTGCAAACTTGGTAGATTATACCTCATTTTGTAG CAAACAAGAGTTGTCTGATTTACTTGGTCCTGAGACTCTTTTGCCTCCAAGTCCATTTAAAGTACGAGCTGTTAAAAGTGACGAACAACTTAAAGAAGAG TGGAAAAGAGCAGGTCCTAGACCACGGCCTTTGCCTCCACCTCCAGACAGGCCTATCTATCAACATGAAAAAGAAGGTTGGTATGGTTGGATAACGGAAA CTGACACTGAACCAGAACCTTCACCAGCAGATCTGAGGATGCAAGCTCACAGGCTATTGTGGGATGCTCTTGATTACATTGTATCTTTGGAAGCGGATGC TTTTTTTCCCGGTTTCAATAATGATGGTAGTAAATGGCCAGATTTCTCAAGTCTGGTCATGGGACAGCGGCTCTACGAGAGTCCTTCTTCCAGAACAGTT CGACCAGATAGGAAAATTATTCAGGAAGCTTTCAAATTGATTCGTGATGATATGTACCATCCGAAATACAATTGGAGCGTTTCAGTAAGGGAACATCTAA ACAAAAGTTTTGGTGTGGATGGGCTTGGGAGGCAGTCACAGTGGTCAAAACCTGCTTCATTCCTTTCCCACCCATTTCCTGAATGCTCGTGTAGAATGTC ATCATCAGGTAGTGTTCCGACCATAGTGAAAGACAAAGAGGGGAGAACAGTTATTGGAGACGAGGATGAGTGTCCGAAATGGATGGAGAGCAATCAAGGA TCTGTGGTAGCTGAATCTTTAGCAGCTGAAGGGGGTTCCAACGAGGATGTGGAATCAGAGTATGAAAATGAAACACAAGATTCGGATGCTAATAATAAGA GTAGCTTAACCCTAGCTATGGACCAGGATGATGAATGGGATCCCAATGACTAA
AA sequence Show only first row Show all	>Lus10010654 pacid=23141662 polypeptide=Lus10010654 locus=Lus10010654.g ID=Lus10010654.BGIv1.0 annot-version=v1.0 MMLFKSRIKWIVLLVLMLSTGSLVVHLSITKFSATNLVQFTPAPALRLDFPSSPGSKRVITVRNKKLWGPVKPLESLQPFANPRSAYPAPSENNNGYIYA KLYGGFSKIRSSICDLVTISRLLNATLVIPEIQDSLRSKGISNKFKSFSYLYDEDQFIASLKNDVRVVKSLPENLKAARKRNEFPIFKPKSSATISFYVK EILPKLRKSEVVGLILADGGCLQSVLPPSMAEFQRLRCRVGFHALQFRQDLKLLGHRIVDRLRQWGQPYIAYHPGLDVHSELIQYRRAQLIKRGMLTDKL SVESHIRRDNGSCPLMPEEVGLVLRAMGYRPNTIIYVAGSETFGGQRLLIPLRAMFANLVDYTSFCSKQELSDLLGPETLLPPSPFKVRAVKSDEQLKEE WKRAGPRPRPLPPPPDRPIYQHEKEGWYGWITETDTEPEPSPADLRMQAHRLLWDALDYIVSLEADAFFPGFNNDGSKWPDFSSLVMGQRLYESPSSRTV RPDRKIIQEAFKLIRDDMYHPKYNWSVSVREHLNKSFGVDGLGRQSQWSKPASFLSHPFPECSCRMSSSGSVPTIVKDKEGRTVIGDEDECPKWMESNQG SVVAESLAAEGGSNEDVESEYENETQDSDANNKSSLTLAMDQDDEWDPND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03810		EDA30	embryo sac development arrest ...		Lus10010654 [exp]	0	1
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10027149 [exp]	3.0	0.8352
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10025924 [exp]	3.5	0.8502
AT2G38580			Mitochondrial ATP synthase D c...		Lus10025211 [exp]	5.5	0.8096
AT2G05590			TLD-domain containing nucleola...		Lus10014476 [exp]	5.9	0.8131
AT2G43240			Nucleotide-sugar transporter f...		Lus10027009 [exp]	8.0	0.8357
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10038176 [exp]	11.8	0.7670
AT2G02910			Protein of unknown function (D...		Lus10037186 [exp]	12.2	0.7618
AT2G15900			Phox-associated domain;Phox-li...		Lus10012042 [exp]	13.7	0.7652
AT1G09910			Rhamnogalacturonate lyase fami...		Lus10000684 [exp]	14.4	0.8272
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Lus10004802 [exp]	15.0	0.7430

Compare expression of checked genes

Lus10010654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.