Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03800 369 / 2e-129 ATSYP131, SYP131 syntaxin of plants 131 (.1) AT5G08080 343 / 7e-119 ATSYP132, SYP132 syntaxin of plants 132 (.1.2.3) AT3G11820 231 / 1e-74 PEN1, AT-SYR1, ATSYR1, ATSYP121, SYP121 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) AT1G11250 221 / 4e-71 ATSYP125, SYP125 syntaxin of plants 125 (.1) AT4G03330 216 / 3e-69 ATSYP123, SYP123 syntaxin of plants 123 (.1) AT1G61290 216 / 6e-69 ATSYP124, SYP124 syntaxin of plants 124 (.1) AT3G52400 201 / 6e-63 ATSYP122, SYP122 syntaxin of plants 122 (.1) AT1G08560 162 / 6e-48 KN, ATSYP111, SYP111 KNOLLE, syntaxin of plants 111 (.1) AT2G18260 122 / 1e-32 ATSYP112, SYP112 syntaxin of plants 112 (.1) AT5G46860 52 / 2e-07 SGR3, ATVAM3, ATSYP22, VAM3 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031553 [exp] 304 / 2e-103 AT3G03800 347 / 4e-120 syntaxin of plants 131 (.1) Lus10015121 [exp] 258 / 9e-86 AT3G03800 306 / 1e-104 syntaxin of plants 131 (.1) Lus10013589 [exp] 223 / 1e-71 AT3G11820 437 / 2e-155 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10021263 [exp] 222 / 7e-71 AT3G11820 436 / 3e-154 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10029373 [exp] 216 / 7e-69 AT3G11820 441 / 4e-157 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10020089 [exp] 216 / 3e-68 AT1G61290 467 / 2e-166 syntaxin of plants 124 (.1) Lus10011244 [exp] 213 / 6e-68 AT1G61290 487 / 2e-175 syntaxin of plants 124 (.1) Lus10018441 [exp] 213 / 8e-68 AT1G61290 491 / 4e-177 syntaxin of plants 124 (.1) Lus10016173 [exp] 214 / 1e-67 AT3G11820 432 / 2e-152 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G036700 [exp] 394 / 6e-139 AT3G03800 391 / 1e-137 syntaxin of plants 131 (.1) Potri.007G123000 [exp] 279 / 7e-93 AT3G03800 300 / 1e-100 syntaxin of plants 131 (.1) Potri.011G043700 [exp] 225 / 9e-73 AT1G61290 456 / 3e-163 syntaxin of plants 124 (.1) Potri.004G035400 [exp] 223 / 7e-72 AT1G61290 490 / 8e-177 syntaxin of plants 124 (.1) Potri.006G202200 [exp] 221 / 3e-71 AT3G11820 412 / 3e-145 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.016G068600 [exp] 216 / 6e-69 AT3G11820 421 / 5e-149 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.013G053200 [exp] 189 / 1e-58 AT1G08560 430 / 8e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.019G030800 [exp] 182 / 6e-56 AT1G08560 431 / 3e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.007G023100 [exp] 132 / 7e-37 AT2G18260 352 / 3e-122 syntaxin of plants 112 (.1) Potri.009G117900 [exp] 131 / 2e-36 AT2G18260 298 / 4e-101 syntaxin of plants 112 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00804 [flax] [poplar] Syntaxin Syntaxin CL0445 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10010655 pacid=23141701 polypeptide=Lus10010655 locus=Lus10010655.g ID=Lus10010655.BGIv1.0 annot-version=v1.0 ATGGGAATGAATTCCGGAGAACTTGGATTGGAGAATTTCTTTAAAAAGGTTCAAGAGATCGAGAAACTATGTGAAAAACTGGATAAGTTACTTAAGAAGC TCCAGGATGCACATGAGGAATCTAAGGCTGTGACCAAGGCTCCTGCCATGAAAGCTATCAAGCAACGGATGGAGAAAGATGTTGATGAAGTTGGAAAGAT TGCTCGATTGGCTAAGGCAAAAATTGAAGCACTTGACAAGGAGAACTATGCAAATCGGCAAAAGCCAGGATGTGGGAAAGGAACTGCTGTAGATCGATCA AGAACTTCAACTACAATCTCTTTGAAGAAAAAGTTCAAAGATAAGATGACTGAATTTCAGTCTCTAAGAGAAATGATCCAGCAAGAGTACCGTGAAGTTG TGGAGAGACGAGTATTCACAGTGACGGGTACAAGAGCAGATGAAGAGACGATTGACAAACTGATTGAGACGGGAGATAGCGAACAGATTTTCCAGAAAGC AATTCACGAACAAGGGCGAGGGCAGGTAATGGATACTCTGGCAGAAATTCAAGAACGTCATGATGCAGTGAGAGATTTAGAAGGAAAACTTTTGGAACTA CAGCAGATTTTCTTGGATATGGCAGTCTTGGTGGATGCACAAGGGGATTTGCTGGACAACATAGAAACACATGTTTCAAGTGCAGTAGACCATGTACAGT CAGGGAATACTGCTCTTCAAAGGGCGAAGTCGTATCAGAAGAGCTCGAGGAAGTGGATGTGCATTGCGATTATAATTCTTCTCATCATCGTTGCGATCAT TGTGGTCGGGGTACTGAAGCCATGGACTAACAAAAAGGGTGCTTAG
AA sequence Show only first row Show all	>Lus10010655 pacid=23141701 polypeptide=Lus10010655 locus=Lus10010655.g ID=Lus10010655.BGIv1.0 annot-version=v1.0 MGMNSGELGLENFFKKVQEIEKLCEKLDKLLKKLQDAHEESKAVTKAPAMKAIKQRMEKDVDEVGKIARLAKAKIEALDKENYANRQKPGCGKGTAVDRS RTSTTISLKKKFKDKMTEFQSLREMIQQEYREVVERRVFTVTGTRADEETIDKLIETGDSEQIFQKAIHEQGRGQVMDTLAEIQERHDAVRDLEGKLLEL QQIFLDMAVLVDAQGDLLDNIETHVSSAVDHVQSGNTALQRAKSYQKSSRKWMCIAIIILLIIVAIIVVGVLKPWTNKKGA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Lus10010655 [exp]	0	1
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10021556 [exp]	4.6	0.8816
AT5G38700			unknown protein		Lus10025041 [exp]	9.1	0.8001
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Lus10013651 [exp]	9.5	0.7936
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10024171 [exp]	13.0	0.8785
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	14.5	0.8950
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10016097 [exp]	14.7	0.8741
AT3G25220		FKBP15-1	FK506-binding protein 15 kD-1 ...		Lus10002339 [exp]	15.0	0.8279
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025198 [exp]	17.2	0.8703
AT5G58110			chaperone binding;ATPase activ...		Lus10040580 [exp]	17.2	0.8348
AT5G27930			Protein phosphatase 2C family ...		Lus10031475 [exp]	17.8	0.8756

Compare expression of checked genes

Lus10010655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.