Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20950 868 / 0 Glycosyl hydrolase family protein (.1.2) AT5G04885 810 / 0 Glycosyl hydrolase family protein (.1) AT5G20940 798 / 0 Glycosyl hydrolase family protein (.1) AT3G47000 667 / 0 Glycosyl hydrolase family protein (.1) AT3G62710 650 / 0 Glycosyl hydrolase family protein (.1) AT3G47040 635 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47010 625 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47050 624 / 0 Glycosyl hydrolase family protein (.1.2) AT5G09730 118 / 1e-27 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1) AT5G49360 115 / 1e-26 ATBXL1, BXL1 beta-xylosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013646 [exp] 1083 / 0 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010657 [exp] 1024 / 0 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10005706 [exp] 887 / 0 AT5G04885 863 / 0.0 Glycosyl hydrolase family protein (.1) Lus10013390 [exp] 843 / 0 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10033393 [exp] 842 / 0 AT5G04885 964 / 0.0 Glycosyl hydrolase family protein (.1) Lus10001151 [exp] 840 / 0 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10008432 [exp] 836 / 0 AT5G20950 927 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10022413 [exp] 767 / 0 AT5G20950 837 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10043457 [exp] 764 / 0 AT5G20950 809 / 0.0 Glycosyl hydrolase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G055600 [exp] 919 / 0 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.019G037400 [exp] 914 / 0 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013500 [exp] 875 / 0 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.009G153900 [exp] 856 / 0 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013700 [exp] 847 / 0 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G042800 [exp] 653 / 0 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G059200 [exp] 373 / 2e-126 AT5G04885 385 / 8e-131 Glycosyl hydrolase family protein (.1) Potri.009G154701 [exp] 279 / 6e-91 AT5G04885 286 / 6e-94 Glycosyl hydrolase family protein (.1) Potri.009G154032 [exp] 258 / 1e-82 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1) Potri.009G154802 [exp] 248 / 3e-78 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010656 pacid=23141704 polypeptide=Lus10010656 locus=Lus10010656.g ID=Lus10010656.BGIv1.0 annot-version=v1.0 ATGAGCTCCTCCAACAGCACCAACCTCATGGTGCAGCTTCTTGGAATTGCAGCTGCTATGCTTTTGTTGTTGGCAGCTACAGCTGATGCTGCACACTACA AAGACCCCAAGCAGCCAGTGGGAGCTCGGATCAAGGACCTCATCGGTCGAGTCATGAAAAACTATTTCATTGGGAGTTTACTGAGTGGAGGAGGAAGTGT CCCTGCTGAGAAAGCTTCACCCCAGCAATGGATTAAGATGATCAACGACTTCCAGAATGGTTCTCTCTCCACCAGGCTCGGAATTCCGATGATTTACGGG ATTGATGCAGTTCATGGACACAACAACGTATATAATGCTACCATCTTCCCTCATAATATCGGCCTTGGTGCCACCAGAGAGCCGGAGCTAGCGAAGAGGA TAGGTGCAGCAACTGCACTTGAAGTCAGGGCCACTGGAATTCCATACGCTTTCGCTCCATGTATCGCTGTGTGCAGAGATCCAAGATGGGGAAGATGCTA CGAGAGCTACAGTGAAGACCCTGAGATTGTCAAAGCAATGACCGAGCTTGTCAACGGTTTACAAGGCGATCTTCCTGCCAACTCCCACAAGGGTGTTCCT TATGTTGCAGGAAAGAAGAAAGTGGCAGCCTGCGCTAAGCACTTTGTTGGAGATGGTGGAACTGTTGATGGAATCAACGAGAATAACACCATCATCGACT GGCATGGATTGATGAAGATCCACATGCCTGGTTACTATACCTCCATAATCAAGGGAGTTTCCAGTGTTATGGTCTCTTACTCTAGCTGGAACGGAATCAA GATGCACGCCAACAAGAAGATGGTCACCGATTTCCTCAAGGGAACTCTTCGTTTCAGGGGTTTTGTGATTTCAGACTGGGAAGGAATTGACAGGATCACC AGCCCACCACATGCTAACTACACCTACTCTGTAGAGAAAGCAATTACTGCTGGAATTGACATGGTCATGGTTCCACTCAACTATACAGAGTTCATTGACG ATCTAACAATGCTAGTGAACAAAGGGTTCATCCCCATGAGCCGAATTGACGATGCAGTCAAAAGAATCCTTAGAGTCAAGTTTGTGATGGGTCTATTTGA AGACCCAATGGCTGATGAGAGCTTGATTCATGAGCTTGGAAGCAAAGAGCACAGAGAGTTGGCAAGAGAAGCTGTAAGGAAATCACTTGTGCTGTTGAAG AATGGTAAAGATGCTAACCAGCCATTGCTGCCACTCCCTAAGGAGGCTCCAAAGATTCTTGTTGCCGGCACCCATGCCGACAATCTTGGCTTTCAATGTG GTGGATGGGCAATTGAATGGCAAGGATTCAGCGGCAATGATCGTACATCTGGAACCACAATCCTCTCTGCCATAAAAAGTACGGTTGATCCAAACACTGA AGTTGTATACCAAGAAAACCCTGCTGAAGATTACGTGAAGTCCAACAACTTTTCGTACGCCATCGTTGTCGTTGGAGAGCACCCTTATGCAGAAACAATG GGTGATAGCTTGAACTTAACGATCCCTAGTCCTGGCCCAAGCACCATTCAGAATGTTTGCTCAGTGGTGAAGTGTGTCGTTGTTGTCATCTCCGGTCGTC CTGTTGTGATTGAACCCTATGTGAGCTCGATGGACGCCATTGTTGCTGCCTGGCTCCCTGGAACTGAAGGTCAGGGTGTTGCAGATGTTCTGTTTGGAGA CTATGGCTTCACTGGGAAACTTCCCAGGACATGGTTCAAGAGTGTTGATCAGCTCCCTATGAATGTTGGGGACAAACATTATGATCCCCTTTATCCCTTT GGATTTGGCCTCACCACTGAACCTGTGAAATCAACTTAG
AA sequence Show only first row Show all	>Lus10010656 pacid=23141704 polypeptide=Lus10010656 locus=Lus10010656.g ID=Lus10010656.BGIv1.0 annot-version=v1.0 MSSSNSTNLMVQLLGIAAAMLLLLAATADAAHYKDPKQPVGARIKDLIGRVMKNYFIGSLLSGGGSVPAEKASPQQWIKMINDFQNGSLSTRLGIPMIYG IDAVHGHNNVYNATIFPHNIGLGATREPELAKRIGAATALEVRATGIPYAFAPCIAVCRDPRWGRCYESYSEDPEIVKAMTELVNGLQGDLPANSHKGVP YVAGKKKVAACAKHFVGDGGTVDGINENNTIIDWHGLMKIHMPGYYTSIIKGVSSVMVSYSSWNGIKMHANKKMVTDFLKGTLRFRGFVISDWEGIDRIT SPPHANYTYSVEKAITAGIDMVMVPLNYTEFIDDLTMLVNKGFIPMSRIDDAVKRILRVKFVMGLFEDPMADESLIHELGSKEHRELAREAVRKSLVLLK NGKDANQPLLPLPKEAPKILVAGTHADNLGFQCGGWAIEWQGFSGNDRTSGTTILSAIKSTVDPNTEVVYQENPAEDYVKSNNFSYAIVVVGEHPYAETM GDSLNLTIPSPGPSTIQNVCSVVKCVVVVISGRPVVIEPYVSSMDAIVAAWLPGTEGQGVADVLFGDYGFTGKLPRTWFKSVDQLPMNVGDKHYDPLYPF GFGLTTEPVKST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20950			Glycosyl hydrolase family prot...		Lus10010656 [exp]	0	1
AT5G57655			xylose isomerase family protei...		Lus10006983 [exp]	3.5	0.9620
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10006009 [exp]	5.5	0.9519
AT2G01690			ARM repeat superfamily protein...		Lus10034578 [exp]	7.5	0.9462
AT5G20950			Glycosyl hydrolase family prot...		Lus10013646 [exp]	7.5	0.9419
AT4G32480			Protein of unknown function (D...		Lus10015437 [exp]	7.9	0.9584
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10019299 [exp]	8.0	0.9539
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Lus10041843 [exp]	8.4	0.9489
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10022282 [exp]	9.5	0.9527
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10027045 [exp]	11.0	0.9578
AT4G19130			Replication factor-A protein 1...		Lus10006887 [exp]	13.3	0.9259

Compare expression of checked genes

Lus10010656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.