Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20950 855 / 0 Glycosyl hydrolase family protein (.1.2) AT5G04885 800 / 0 Glycosyl hydrolase family protein (.1) AT5G20940 795 / 0 Glycosyl hydrolase family protein (.1) AT3G47000 696 / 0 Glycosyl hydrolase family protein (.1) AT3G62710 661 / 0 Glycosyl hydrolase family protein (.1) AT3G47040 656 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47010 653 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47050 651 / 0 Glycosyl hydrolase family protein (.1.2) AT5G64570 130 / 1e-31 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT3G19620 127 / 1e-30 Glycosyl hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013646 [exp] 1053 / 0 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010656 [exp] 995 / 0 AT5G20950 897 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10005706 [exp] 890 / 0 AT5G04885 863 / 0.0 Glycosyl hydrolase family protein (.1) Lus10033393 [exp] 830 / 0 AT5G04885 964 / 0.0 Glycosyl hydrolase family protein (.1) Lus10001151 [exp] 826 / 0 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013390 [exp] 824 / 0 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10008432 [exp] 811 / 0 AT5G20950 927 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10023604 [exp] 785 / 0 AT5G20950 822 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10022413 [exp] 779 / 0 AT5G20950 837 / 0.0 Glycosyl hydrolase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G055600 [exp] 902 / 0 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.019G037400 [exp] 896 / 0 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013500 [exp] 867 / 0 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.009G153900 [exp] 845 / 0 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013700 [exp] 843 / 0 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G042800 [exp] 681 / 0 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G059200 [exp] 343 / 2e-114 AT5G04885 385 / 8e-131 Glycosyl hydrolase family protein (.1) Potri.009G154701 [exp] 270 / 4e-87 AT5G04885 286 / 6e-94 Glycosyl hydrolase family protein (.1) Potri.009G154802 [exp] 236 / 1e-73 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1) Potri.009G154032 [exp] 230 / 5e-72 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010657 pacid=23141690 polypeptide=Lus10010657 locus=Lus10010657.g ID=Lus10010657.BGIv1.0 annot-version=v1.0 ATGGGCACCTCCAACCTGATGGTGCAGCCTTTTGGAATCGTGGTTGCTCTGGCTTTGTTGTTGGCAGCTACAGCTAATTCTGCAGACTACAAAGACCCGA AACAGCCAGTGGAAGCTCGGATCGAGGACCTCATCAGTCGGATGACGCTGCAGGAAAAGATCGGACAGATGGTCCAGATCGATAGCAAGGTCGCTTCACC TGATGTCATGAAAAACTACTTCATCGGGAGTTTGCTGAGTGCTAGTGGAAGCGTCCCCGCAGAGAAAGCTTCACCCCAGCAGTGGATAAAGATGATCAAC GACTTCCAGAATGGTTCTCTCTCAACCAGGCTTGGAATCCCAGTGATTCACGGCATGGATGCAGTTCACGGCCACAACTATGTGTATAATGCTACCATGT TCCCTCATAATGTTGGCCTTGGTGCCACCAGAGATTCGGAGCTGGTGAAGAGAATAGGTGCAGCAACTGCGCTTGAAGTGAGGGCCACTGGTATTCCATA TGTTTTCGCTCCATCTATCGCTGTGTGCAGAGATCCGAGATGGGGAAGGTGCTATCAGAGCTACAGTGAAGATCCTGATCTTGTTACAGCAATGACGGAG ATTGTAACCGGTTTACAAGGCGATCTTCCCGCTAACTCGAACAAGGGTATACCTTATGTTGCAGGAAAGAAGAAAGTGGCGACCTGCACCGAGAACTTTG TTGGAGATGGTGGAACTGTTGATGGAATCGACGAGAATAACGCCATCGTCGACTGGGATGGACTGATGAAGATCCACTTGCCTCCATACTATACCTCCAT AACTAAGGGAGTTTCCAGTGTCATGATCTCTTACTCTAGCTTGAACGGAATCAAGATGCACGCTAACAAGAAGATGATCACCGACTTCCTCAAGGGCACT CTTCGTTTCATGGGTTTTGTGATTTCGAACTGGGAAGGAATTGACAGGATCACCAGCCCACCACATTCTAACTACACGTACTCTGTAGAGCAAGCAATTA CTGCTGGAATTGACATGGTCATGGTTCCACACAACTACACAGAATTCATTGACGATCTAACAATGCTAGTGAACAAAGGGTTCATCCCCATGAGCCGAAT TGACGATGCAGTCCAGAGAATCCTGAGAGTCAAGTTTGTGATGGGTCTGTTTGAAGACCCAATGGCTGATGAGAGCTTGGTTCATGAGCTTGGCAGCAAA GAGCACAGAGAATTGGCAAGAGAAGCCGTAAGGAAATCACTTGTGCTGTTGAAGAACGGTAAAGATGCTAACCAACCATTGCTACCACTCCCTAAGAAGG CTCCAAAGATTCTTGTTGCGGGCACCCATGCCGATAATCTTGGATATCAATGTGGTGGATGGGCAATTGAATGGCAAGGATTTAGCGGCAATTATCGTAC AACTGGAACCACAATCCTCTCTGCCATAAAAAGCACAGTTGATTCAAGCGCTGAAGTTGTATACCAAGAAAACCCTGCCGAAGACTACGTCAAGTCCAAC AACTTCTCATACGCCATCGTTGTGGTCGGAGAGCAACCATATGCAGAAGCAATGGGTGATAACTTGAACTTGACGATCCCTAGTCCTGGCCCAAGCACGA TTCAGAATGTTTGCTCAGCTGTGAAGTGTGTCGTTGTTGTCATCTCCGGTCGTCCTGTTGTGATTGAACCCTATGTGAGCTCGATGGACGCCATTGTTGC TGCCTGGCTCCCTGGAACTGAAGGTCAGGGTGTTGCTGATGTTCTGTTCGGAGATTATGGCTTCACTGGGAAACTTCCCAGGACATGGTTCAAGAGAGTT GATCAGCTCCCTATGAATGTTGGGGACAAAGACTATGATCCCCTTCACCCCTTTGGATTTGGCCTCACCACTGAACCTGTGAAGTCAACTTAG
AA sequence Show only first row Show all	>Lus10010657 pacid=23141690 polypeptide=Lus10010657 locus=Lus10010657.g ID=Lus10010657.BGIv1.0 annot-version=v1.0 MGTSNLMVQPFGIVVALALLLAATANSADYKDPKQPVEARIEDLISRMTLQEKIGQMVQIDSKVASPDVMKNYFIGSLLSASGSVPAEKASPQQWIKMIN DFQNGSLSTRLGIPVIHGMDAVHGHNYVYNATMFPHNVGLGATRDSELVKRIGAATALEVRATGIPYVFAPSIAVCRDPRWGRCYQSYSEDPDLVTAMTE IVTGLQGDLPANSNKGIPYVAGKKKVATCTENFVGDGGTVDGIDENNAIVDWDGLMKIHLPPYYTSITKGVSSVMISYSSLNGIKMHANKKMITDFLKGT LRFMGFVISNWEGIDRITSPPHSNYTYSVEQAITAGIDMVMVPHNYTEFIDDLTMLVNKGFIPMSRIDDAVQRILRVKFVMGLFEDPMADESLVHELGSK EHRELAREAVRKSLVLLKNGKDANQPLLPLPKKAPKILVAGTHADNLGYQCGGWAIEWQGFSGNYRTTGTTILSAIKSTVDSSAEVVYQENPAEDYVKSN NFSYAIVVVGEQPYAEAMGDNLNLTIPSPGPSTIQNVCSAVKCVVVVISGRPVVIEPYVSSMDAIVAAWLPGTEGQGVADVLFGDYGFTGKLPRTWFKRV DQLPMNVGDKDYDPLHPFGFGLTTEPVKST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20950			Glycosyl hydrolase family prot...		Lus10010657 [exp]	0	1
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10037768 [exp]	1.0	0.8983
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Lus10021901 [exp]	2.8	0.8806
AT1G62760			Plant invertase/pectin methyle...		Lus10031132 [exp]	5.7	0.8695
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Lus10041186 [exp]	10.4	0.8383
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10014089 [exp]	14.4	0.8406
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10041654 [exp]	14.5	0.8480
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10020035 [exp]	15.5	0.8495
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	16.7	0.8735
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Lus10011330 [exp]	18.5	0.8345
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10015561 [exp]	22.9	0.8238

Compare expression of checked genes

Lus10010657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.