Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17980 1191 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G74720 828 / 0 QKY QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G11610 737 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G06850 734 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 733 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 730 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G48060 724 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G51570 719 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT3G03680 707 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 665 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033097 [exp] 838 / 0 AT1G74720 1566 / 0.0 QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 738 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 738 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 738 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 734 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 734 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 733 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 644 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 642 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G055500 [exp] 1248 / 0 AT5G17980 1233 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G098700 [exp] 830 / 0 AT1G74720 1272 / 0.0 QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G113800 [exp] 825 / 0 AT1G74720 1521 / 0.0 QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 761 / 0 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 751 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 749 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G125900 [exp] 746 / 0 AT4G11610 1543 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 745 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 744 / 0 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.002G158000 [exp] 744 / 0 AT4G11610 1400 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0484 [flax] [poplar] Peroxisome PF08372 [flax] [poplar] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Lus10010658 pacid=23141692 polypeptide=Lus10010658 locus=Lus10010658.g ID=Lus10010658.BGIv1.0 annot-version=v1.0 ATGGCTGCCACCCAGAAACTCATAGTACAAGTAATAGACGCTCGCAACCTTCTCCCAAAGGACGGCCAAGGTACCTCCAGCCCCTACGTAGTCATCGACT TCTATGGTCAGCGGAAGCGCACCCGCACCTCCCCCCGCGACCTCAACCCGACCTGGAATGAAACCCTTGAATTCAACGTCGGCAAGCCCTCTAACGTCTT CGACGACATGCTTGAGCTGGATCTCTACCACGACCGGACCTACGGCCCAACCCGCCGCAACAATTTCTTGGGCCGGATCCGCCTTAGCTGCACCCAGTTC GTTAGGAAAGGCGAGGAGGCTCTCATCTATTACACTCTCGAGAAGAAGCAGCTCTTCAGCTGGGTTCAGGGTGAAATCGGTTTGAAGATCTATTACCAGG ATGATCAGCTCGTTCATGCTACCGACGACAAAGCTGCAAAAAAGGAAGCTGAATCAGAATCACAACCGGCGGCACCTACAGAGGAAAAACCATCTGAATC TGAGAAACCGACAGCTTCCGACGACGTACCGCCGCCGACTCAAATTGATGATCCGCCGGGACCAGAAATTAATACTGTCCCTCCGCCTCCTCCTCCTCCT ACTCCTCCGCCGCCACCTGGACAAGAAACGGAAACTATGGTGGAGGAAGACGAGGACGACATCGTTTTAGACCCGCCGGATCACATTATGGCATCCGCTG TGTCAGGATCTGTTCCTGAAGTCAAATTAGCACCGCCGACGTCAATCCATGGTGGTCCCCATCCGATCATGAGGCCGCTATCCCCCACCAGCACATTGGA TCCGCAAGAGAGCATTTCGATCGAACGGTCATCCTTCGATCTGGTTGAGAAGATGCATTACGTGTTCGTCCGGGTAGTGAAAGGTCGGTATCTACCAACA AACGGGAATCCAATCGTAGGGATCGCAGTTTCGGCCAGCCGCATCCAATCAAAACCGGCTCGCAAGACGTCATTCTTTGAGTGGGACCAGACGTTTGCTT TCGGCCGTGACGCACCTGATTCGTCAACCATCTTGGAGATCTCGGTCTGGGACCACAACTCATCCGACGTGGCACGCGGAAAATTCTTGGGAGGGATTTG TTTCGACGTGACGGAAATTCCTCTGAGGGATCCACCTGATAGTCCTCTGGCCCCACAGTGGTACAGGTTGGAAGGAGGTGGAGCGGCAAATAGTGATCTC ATGCTCGCCACGTGGGTAGGCACCCAGGCTGACGAGGCCTTTCCTGAAGCGTGCAAGACTGATACGTCCGGTAATTTAAATTCCAGAGCGAAGGTCTACG TTTCTCCAAAGCTATGGTATCTTCGTGCTACGGTTCTCGAAGCGCAGGACGTTACACAGTCAACGTTTAAGGAAGCGTCCTTTCATTTGAGAGCCCAACT CGGGTTCCAAATCCAGAAGACGAAATCGGTCATTACTCGAAACGGTACGCCGTCATGGAACGAGGATCTACTCTTTGTGGCGGCGGAGCCATTTGCGGAT CACTTGATCTTCACGCTAGAGGCTCGCCAGCACAAAGGACAAGCGGCAGTCGCCGTCACCAGAGTACCTCTCGCTTCCATCGAGAGGAGGGTCGACGACA GGCAAGTGGCCGCCCGGTGGTTTAATTTTGAAGATCCATCAGACAGCGAAAATGTGAGGAGGTACAAAGGGAGAGTCCAGCTAAGGCTATGCTTCGACGG CGGGTATCACGTTATGGATGAGGCGGCCCACGTATGTAGTGATTACCGTCCGACGGCGAGGCAATTGTGGAAGCCTCCAATCGGGACGGTGGAGCTTGGG ATCATCGGATGCAGGAATTTGCTACCAATGAAAACGAATGAAGGTAAAGGATGTACGGATGCATATTGCGTAGCCAAATACGGGCAGAAGTGGGTCCGCA CGAGAACCGTTTCCGATAGCTTGGATCCGAGATGGAACGAGCAGTACACGTGGCGTATTTTTGATCCGTCCACTGTATTGACCATGGGAGTCTTCGACAG CTCGAGAGCGACGACCGAATCTGAGGGTGATGAGAACGCCGCGCGTCCCGATATCCGGATGGGAAAGGTTAGGATCCGTATATCATCGCTCGAAACAGGT AAAGTGTACCGAAACTCCTATCCGTTGATTGTCTTGACTAACAGCGGAGTCAAGATAATGGGAGAGATAGAAGTAGCGGTGAGATTTATCCGTTCCGTAC CAACGCTCGATTTCCTCCACGTGTACTCACAACCTCTATTGCCGTTGATGCATCACGTAAAGCCGCTTGGAGTTGTCCAACAAGAGGTGTTGAGGAATAT CGCGGTGAAGATCATAGCCACACACCTGTCACGATCTGAGCCGCCCATTAGAAAGGAAGTGGTCCTCCATATGCTCGACGTGGACACACATTCCTTCAGC ATGAGGAAAGTGCGGGCCAACTGGGTCCGGATCGTCAACGTGATTGCGGGGTTAATTGACATCGTACGGTGGATAGACGACACGCGCGTGTGGAAGAACT CGACGGCTACGATTCTCGTCCATGTGCTGATGGTGCTGCTTGTGTGGTTCCCTGATCTGATCATCCCAACACTCGCGTTTTACGTGTTCGCGATAGGAGC GTGGAACTACCGGTTCAGATCGTCAAAAGCGGCGCCGCCGCACTTCGATCCGAAGCTGTCGCTGGCGGATGTGGTGGATAGGGAGGAGCTGGACGAGGAA TTCGACGGGGTGCCGAGCGGGAGGGCGGCGGAGACGGTGAGAGGGAGGTACGACAAGCTGAGGACGGTGGGGGCGAGGGTGCAGACGGTGTTGGGGGATG TGGCGGCGCAAGGGGAGAGGGTTCAGGCGCTAGTGACGTGGCGAGATCCGAGGGCGACGGGGATATTTGTAGTGTTGTGTTTTGTGGTGGCGATGATTTT GTATCTGGTGCCGTCGAAGATGGTGGGGATGGCATGTGGGTTCTATTACTTCCGACATCCGATATTTCGAGACAGGATGCCGTCGCCGGTGCTGAATTTC TTCCGGAGGCTTCCTTCGCTTTCTGATAGAATTATGTAG
AA sequence Show only first row Show all	>Lus10010658 pacid=23141692 polypeptide=Lus10010658 locus=Lus10010658.g ID=Lus10010658.BGIv1.0 annot-version=v1.0 MAATQKLIVQVIDARNLLPKDGQGTSSPYVVIDFYGQRKRTRTSPRDLNPTWNETLEFNVGKPSNVFDDMLELDLYHDRTYGPTRRNNFLGRIRLSCTQF VRKGEEALIYYTLEKKQLFSWVQGEIGLKIYYQDDQLVHATDDKAAKKEAESESQPAAPTEEKPSESEKPTASDDVPPPTQIDDPPGPEINTVPPPPPPP TPPPPPGQETETMVEEDEDDIVLDPPDHIMASAVSGSVPEVKLAPPTSIHGGPHPIMRPLSPTSTLDPQESISIERSSFDLVEKMHYVFVRVVKGRYLPT NGNPIVGIAVSASRIQSKPARKTSFFEWDQTFAFGRDAPDSSTILEISVWDHNSSDVARGKFLGGICFDVTEIPLRDPPDSPLAPQWYRLEGGGAANSDL MLATWVGTQADEAFPEACKTDTSGNLNSRAKVYVSPKLWYLRATVLEAQDVTQSTFKEASFHLRAQLGFQIQKTKSVITRNGTPSWNEDLLFVAAEPFAD HLIFTLEARQHKGQAAVAVTRVPLASIERRVDDRQVAARWFNFEDPSDSENVRRYKGRVQLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPIGTVELG IIGCRNLLPMKTNEGKGCTDAYCVAKYGQKWVRTRTVSDSLDPRWNEQYTWRIFDPSTVLTMGVFDSSRATTESEGDENAARPDIRMGKVRIRISSLETG KVYRNSYPLIVLTNSGVKIMGEIEVAVRFIRSVPTLDFLHVYSQPLLPLMHHVKPLGVVQQEVLRNIAVKIIATHLSRSEPPIRKEVVLHMLDVDTHSFS MRKVRANWVRIVNVIAGLIDIVRWIDDTRVWKNSTATILVHVLMVLLVWFPDLIIPTLAFYVFAIGAWNYRFRSSKAAPPHFDPKLSLADVVDREELDEE FDGVPSGRAAETVRGRYDKLRTVGARVQTVLGDVAAQGERVQALVTWRDPRATGIFVVLCFVVAMILYLVPSKMVGMACGFYYFRHPIFRDRMPSPVLNF FRRLPSLSDRIM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17980			C2 calcium/lipid-binding plant...		Lus10010658 [exp]	0	1
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10001133 [exp]	1.4	0.9236
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10035784 [exp]	3.5	0.9179
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10037358 [exp]	4.0	0.9020
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10036242 [exp]	4.6	0.9049
AT4G31140			O-Glycosyl hydrolases family 1...		Lus10024535 [exp]	6.2	0.8448
AT1G62760			Plant invertase/pectin methyle...		Lus10028910 [exp]	6.2	0.8118
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10016031 [exp]	6.3	0.8709
AT3G52490			Double Clp-N motif-containing ...		Lus10016966 [exp]	7.7	0.8969
AT3G52490			Double Clp-N motif-containing ...		Lus10021291 [exp]	8.8	0.8874
					Lus10020368 [exp]	9.2	0.8615

Compare expression of checked genes

Lus10010658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.