Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03790 1217 / 0 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein AT5G63860 131 / 2e-32 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G60870 119 / 2e-28 RUG3 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) AT5G12350 115 / 8e-26 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G27060 109 / 2e-25 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G02510 108 / 5e-25 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G16040 108 / 6e-25 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G42140 108 / 1e-23 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 107 / 3e-23 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G65920 105 / 8e-23 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013648 [exp] 2008 / 0 AT3G03790 1249 / 0.0 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein Lus10039618 [exp] 126 / 2e-30 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10042215 [exp] 122 / 4e-29 AT5G60870 547 / 0.0 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) Lus10029536 [exp] 122 / 5e-29 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10035957 [exp] 116 / 2e-27 AT5G08710 504 / 1e-178 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10033543 [exp] 105 / 6e-24 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10036030 [exp] 105 / 9e-23 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10042800 [exp] 105 / 1e-22 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10037219 [exp] 102 / 1e-22 AT1G27060 424 / 1e-147 Regulator of chromosome condensation (RCC1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G055300 [exp] 1362 / 0 AT3G03790 1320 / 0.0 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein Potri.007G100200 [exp] 131 / 4e-32 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G139600 [exp] 124 / 1e-28 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G101800 [exp] 116 / 1e-27 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G113200 [exp] 112 / 2e-26 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G000600 [exp] 111 / 2e-25 AT5G60870 534 / 0.0 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) Potri.004G080900 [exp] 113 / 3e-25 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.005G071000 [exp] 108 / 8e-25 AT5G08710 515 / 0.0 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.002G070300 [exp] 108 / 1e-23 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 106 / 5e-23 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10010659 pacid=23141677 polypeptide=Lus10010659 locus=Lus10010659.g ID=Lus10010659.BGIv1.0 annot-version=v1.0 ATGTCTCAAGTACAAAAGCAACCTATGCAAGTCACTTCACGGAAACTCTCGCCGTCAAGTTCTCGGAAAGATCTGTGGCTCACTGTACGAGAAGGGTCAT TGGCTGATGTAGATTCTGCATTGGCATTGCTAAAGAAGAATGGGGCCAACATCAATTCACGAAATTCAATGGGCCTCACTCCACTTCATATTGCAACTTG GAGAAATCACATTCCCATTGTTAGGAAGCTGCTCGCTGCTGGTGCTGACCCTGATGCAAGGGATGGAGAATCAGGATGGAGTAGTCTTCATAGGGCTCTG CATTTTGGTCATCTTGCAGCGGCGAGTGTTCTGCTTCAGTCTGGTGCTTCCATTTCCTTGGAGGACTCTAAATTTCGTACACCAGTTGATCTCTTGTCTG GACCTGTAGCTCAGGTTCTTGGGGATGGATCTAACTCGGCTACGGAGGTGCTTAGTTGGGGAAGTGGTGCCAATTATCAACTTGGAACTGGAAATTCCGA CTTACAAAAGCTGCCCTGCAAAGTTGATACACTTCATGGTTCCTTAATTAGACTGGTATCTGCTGCAAAGTTTCACAGTGCAGCAGTTAGTGACCGCGGG GAAGTGTATACATGGGGATTTGGAAGAGGGGGCCGTCTTGGACATCCCGACTTTGATATCCATAGTGGCCAAGCAGCTGTAATCACACCTCGCCAAGTGA CTTCTGGAATAGGGAGCCGACATGTAAGGGCTATTGCTGCCGCTAAACACCATACTATTCTTGCTACAGAGGGTGGGGAAGTTTTCACCTGGGGATCGAA CAGAGAAGGTCAGTTGGGTTACACTGTGGACACTCAACCAACACCTCGCAGAGTTAGTTCCATCAAGTCAAAGATTGTTGCAGTTGCTGCCGCAAACAAA CACAGTGCTGTTGTTTCTGACTCTGGTGAAGTGTACACATGGGGCTGCAATAGCGATGGCCAGCTTGGTTATGGCACCTCTAACTCAGCTTCCAATTACA CTCCACGTGTAGTTGAGTCTTTGAAAGGGAAGTTATTTACTGGAGTTGCAGCTGCAAAATCCCATACCGTCGCCTTACGGAATGATGGCGAGGTTTACAC CTGGGGCCATCGTCTTGTTACCCCAAGACGTGTTATCGTTTCAAGAAATCTGAAGAAAAGTGGTGGTACCCCTCTGAAGTTTCACCGCATGGAGCGTCTT CATGCTGTAGCTATTGCTGCTGGGATGGTGCATAGCCTGGCTCTTATGGATGATGGTGCCCTGTTTTATTGGGCTTCTGCAGATCCTGATATTAAATGCC AACAGCTGCATACACTCTGTGGGAGAAGTATTGTGAGCGTATCTGCTGGTAAGTATTGGGGTGCAGTAGTCACCGATACTGGTGATGTCTACACATGGGA TAGCAAACAAGACAGGAATAAGCCGCCAGTTCCTACACGATTACAAGGTGTGAAAAGGGCTACGTCAGTTGTAGTTGGGGAAACGCATTTATTAGTTGTC AGCTCTCTCTATCATCCGCCCATTTCCCCTAATGCTGCCGAGATCAATCAAAGCCAGAAGTTGCAAGATAAGAGAGATATGGAAGACCTCGAAGATTTCC TATTTGACAATACTGAGTCGAAGGATGAGCTATATGTCGAAGACAATAAGATTACTGGGCAAAAGTCTGTGCCAAGCTTAAAGTCTCTCTGCGAGAAGTC AGCAGCAGATAATTTAGTCGAGACACGAAGTGCTGTACAAATGCTTGAAATTGCTGACACACTTGAGGCGGATAATCTGAAGAAGCATTGTGAGGACATT GTTATTCACAACCTGGACTATCTTTTGACCGTCTCATCGCGTTCATTTACTGCAACAGCCTTGGAAATCCTGGCTGGCCTGGAAACTCTGTTGGATCAAA GGTCATCTGAGCAATGGAGTTACCGCAGGCTTCCAACTCCAACAGCTACATTCCCTGCCGTTCTGAATAGTGAAGAGGATGCTAGTGATAGTGAGGTTTC CAGAACCCGTGATAACCACAACTATAAATATGTTCCTTGGGTACAAGGAACAGACCGTAGACAAGACTCTTTTTTTCATCCTGTGGATGAGGCCGATCAA GAACAGCTGAAACAAGTTCGTGCTTTGCGAAAGAAGTTGCAGCAGATTGAGATGCTTGAGGAAAAGAAACTCAATGGCTATCAGCTCGATAGCCAGCAAA CTGCTAAACTTCAAACAAAGTTGGAAATCGAGAGTTTACTGGCTGAGCTTGGTGTCCAAGTCGAGACAGTGAAAGCCAAATCTTCGGCTTCAACTTCCTC TGAAATGAGGGGTAATAACAAAAGGCCAAAGGCATCAAGAAAGCAAAAGAGAAATAGCAAGATCAAGGACGAGGAACCTGAATTGCCTTCTGGTTTTGAT GGAAATAAGCTAGAGGTAGACGCTGTAAAACAACTCCCATATGCTGCTGACATCTCTCCGGTCTCCACTAATAAGGAGGAAGATGAAGCAGTGCAGTCCA AGCGCTCTACCGACAATCATGGGGTAATTGTTAAGGGCTTTCCAGACTTGGCAGTGAAGAATAAGAGATCATCTCCTCCAGCAAGCAAGAAGAAGAACAG GAAAGGAGGTCTTTCCATGTTTTTGAGTGGCGCACTTGATGATTCTTCAAAAGAGGAGGTTACTCCTCCCCCTCCGCCAACCCCTAAACAGGAGGGCCCA GCTTGGGGCGGGGCCAAAATATCAAAGGATCGTGCTTCACTTCGCTTGATTCTGGACGAGCAGAGCAAAACAACTGGCGGCAACCCGAAGAACATCATTA CTCCTCCGGTCGATGAGCAGCCTCCTGCCAGTAGGGGTGATGGGAAGGTGTCTCTAAGCTCATTCATTTCTTCCAAACCCATAGCTGTAGCTTGCACATC TCATGCTACTGATGCTGAGAAGGGCACTCCTCCGTGGGTTTCTGGGACGTCTCCTCTTATGTCTCGTCCTTCTCTACGAGACATCCAGATGCAACAGCAG GGGAAACATCATCAGGGACTTTGCCACAGTCCAAAGACAAGAACGGCTGGATTTACGATCACGACAGGGCAGGGATCCCCATACAGGGCAGGTACCCCTT CGGATTCTCCAGCCACAAACAAGTGGTTTAAGCCAGAGATTGATGCACCATCGTCGATCCGGTCGATCCAGATTGAGGAGAAGGCAATGAAGGACCTGAA GCGATTCTATAGCAGTGTGAAGATAGTGAGGAATGCTGCTTGA
AA sequence Show only first row Show all	>Lus10010659 pacid=23141677 polypeptide=Lus10010659 locus=Lus10010659.g ID=Lus10010659.BGIv1.0 annot-version=v1.0 MSQVQKQPMQVTSRKLSPSSSRKDLWLTVREGSLADVDSALALLKKNGANINSRNSMGLTPLHIATWRNHIPIVRKLLAAGADPDARDGESGWSSLHRAL HFGHLAAASVLLQSGASISLEDSKFRTPVDLLSGPVAQVLGDGSNSATEVLSWGSGANYQLGTGNSDLQKLPCKVDTLHGSLIRLVSAAKFHSAAVSDRG EVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGIGSRHVRAIAAAKHHTILATEGGEVFTWGSNREGQLGYTVDTQPTPRRVSSIKSKIVAVAAANK HSAVVSDSGEVYTWGCNSDGQLGYGTSNSASNYTPRVVESLKGKLFTGVAAAKSHTVALRNDGEVYTWGHRLVTPRRVIVSRNLKKSGGTPLKFHRMERL HAVAIAAGMVHSLALMDDGALFYWASADPDIKCQQLHTLCGRSIVSVSAGKYWGAVVTDTGDVYTWDSKQDRNKPPVPTRLQGVKRATSVVVGETHLLVV SSLYHPPISPNAAEINQSQKLQDKRDMEDLEDFLFDNTESKDELYVEDNKITGQKSVPSLKSLCEKSAADNLVETRSAVQMLEIADTLEADNLKKHCEDI VIHNLDYLLTVSSRSFTATALEILAGLETLLDQRSSEQWSYRRLPTPTATFPAVLNSEEDASDSEVSRTRDNHNYKYVPWVQGTDRRQDSFFHPVDEADQ EQLKQVRALRKKLQQIEMLEEKKLNGYQLDSQQTAKLQTKLEIESLLAELGVQVETVKAKSSASTSSEMRGNNKRPKASRKQKRNSKIKDEEPELPSGFD GNKLEVDAVKQLPYAADISPVSTNKEEDEAVQSKRSTDNHGVIVKGFPDLAVKNKRSSPPASKKKNRKGGLSMFLSGALDDSSKEEVTPPPPPTPKQEGP AWGGAKISKDRASLRLILDEQSKTTGGNPKNIITPPVDEQPPASRGDGKVSLSSFISSKPIAVACTSHATDAEKGTPPWVSGTSPLMSRPSLRDIQMQQQ GKHHQGLCHSPKTRTAGFTITTGQGSPYRAGTPSDSPATNKWFKPEIDAPSSIRSIQIEEKAMKDLKRFYSSVKIVRNAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03790			ankyrin repeat family protein ...		Lus10010659 [exp]	0	1
AT3G03790			ankyrin repeat family protein ...		Lus10013648 [exp]	1.0	0.9364
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10032888 [exp]	1.4	0.9314
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10034005 [exp]	2.4	0.9251
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10012770 [exp]	4.5	0.9020
AT1G09910			Rhamnogalacturonate lyase fami...		Lus10000684 [exp]	6.5	0.8973
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Lus10001638 [exp]	7.7	0.8887
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10002209 [exp]	8.0	0.9109
AT2G27900			unknown protein		Lus10009613 [exp]	8.8	0.8975
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036039 [exp]	8.9	0.8949
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10038106 [exp]	9.5	0.8794

Compare expression of checked genes

Lus10010659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.