Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G32450 341 / 4e-118 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G16840 199 / 2e-62 BPA1 binding partner of acd11 1 (.1.2.3) AT5G46870 200 / 3e-62 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G17720 196 / 1e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G67950 153 / 2e-44 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G14340 133 / 4e-37 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G01210 105 / 2e-26 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G16940 46 / 2e-05 Splicing factor, CC1-like (.1.2.3) AT5G09880 45 / 7e-05 Splicing factor, CC1-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013651 [exp] 495 / 7e-176 AT5G32450 343 / 5e-117 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10040095 [exp] 196 / 1e-60 AT4G17720 379 / 8e-133 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030952 [exp] 192 / 5e-59 AT4G17720 382 / 7e-134 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011063 [exp] 176 / 1e-52 AT4G17720 333 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10025743 [exp] 164 / 2e-48 AT4G17720 295 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10000676 [exp] 162 / 1e-47 AT4G17720 313 / 1e-106 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10035919 [exp] 137 / 3e-38 AT4G17720 226 / 3e-73 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030491 [exp] 135 / 7e-38 AT1G14340 300 / 1e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012843 [exp] 133 / 5e-37 AT1G14340 301 / 5e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G037600 [exp] 372 / 3e-130 AT5G32450 400 / 2e-142 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.013G055100 [exp] 365 / 2e-127 AT5G32450 389 / 9e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G138400 [exp] 206 / 1e-64 AT4G17720 365 / 2e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G095400 [exp] 191 / 3e-59 AT4G17720 355 / 9e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G103600 [exp] 189 / 8e-58 AT1G67950 280 / 6e-94 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.017G081500 [exp] 129 / 7e-36 AT1G14340 239 / 6e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081400 [exp] 127 / 1e-34 AT1G14340 229 / 3e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G070200 [exp] 56 / 5e-09 AT5G32450 65 / 8e-13 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G009800 [exp] 50 / 1e-06 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.004G177000 [exp] 49 / 3e-06 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10010660 pacid=23141694 polypeptide=Lus10010660 locus=Lus10010660.g ID=Lus10010660.BGIv1.0 annot-version=v1.0 ATGCAGACTACAAGAACGGTTCAGGTGAAGCAGCTTTCAGATCTAGCTGGTGAGAGAGAGATTCACGAGTTCTTCTCCTTCTCCGGCGAAATCGAGCACA TTCAAATCCACCGTGACAATGGGAAGTCAGCATTCGTCACATTCAAAGATGCCAAAGCACTTGAAATTGCTTTGCTATTATCGGGCGCTACTATTGTGGA CCAAATAGTGACAATTTCACCTGCTGAAGACTATGTGCAAAATCGTGAGCATCAGGAAGTTAGCGTGGTAGAGAATTCTGTCTCTGTTAGTCCTCCAGAC CATCCGACATCTCATTGTGAGGAAAAAGCTAGTCCACCACGGGGAAAAGTGTACGTCAACAAAGCACAAGTAGTGGTTACAAACATGCTAGCTAAAGGGT CAGCTATTAGTCAAGATGCAATGAATAAAGCAAAAGCATTTGATGAGAAGCATCGGTTGACTGCCAGTGCTTCTGCCAAGGTCAGCTCCTTTGATCGGAG AGTTAAGCTGAAAGAGAAGTTCACTGTAGGAATTTCAGCTGTTAATGAGAAAGTGAAGCTAGTTGATCAAAAGCTTCAAGTATCAGATAGAACAATGGCA GCAATTTTCGCTGCAGAAACAAAGATAAACAACACAGGATCAGCTGTGAAGTCAAGCAGGTATGTGACAGTTGGGTCAGCTTGGCTAAATGGTGCTTTCA GTAAGGTGGCAAAGGCAGGGCAGGTTGCTGGGGTTAAAACCAGGGAAAAGTTTAATACTGCTGTTTCAAACTTGTCTGCTAAGGTAAGGGGACAATTCAG ACACTCCAATTGCTGTTTAGTAGAGAGAGCAGAGCAGAGCAGAGGTATAGCAGAACATGGAGGTGTGGATTTGGGATGGAGGAACTTGTGCAGTGGTGGT GTTCTATTTTTGGGTGTGGGGATTGTTATGATGCGTTGTTATTTGGCAGTGTATCCATTAGCATCATCGTCAATCTTGTAG
AA sequence Show only first row Show all	>Lus10010660 pacid=23141694 polypeptide=Lus10010660 locus=Lus10010660.g ID=Lus10010660.BGIv1.0 annot-version=v1.0 MQTTRTVQVKQLSDLAGEREIHEFFSFSGEIEHIQIHRDNGKSAFVTFKDAKALEIALLLSGATIVDQIVTISPAEDYVQNREHQEVSVVENSVSVSPPD HPTSHCEEKASPPRGKVYVNKAQVVVTNMLAKGSAISQDAMNKAKAFDEKHRLTASASAKVSSFDRRVKLKEKFTVGISAVNEKVKLVDQKLQVSDRTMA AIFAAETKINNTGSAVKSSRYVTVGSAWLNGAFSKVAKAGQVAGVKTREKFNTAVSNLSAKVRGQFRHSNCCLVERAEQSRGIAEHGGVDLGWRNLCSGG VLFLGVGIVMMRCYLAVYPLASSSIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Lus10010660 [exp]	0	1
AT4G17070			peptidyl-prolyl cis-trans isom...		Lus10036745 [exp]	3.2	0.8685
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10041622 [exp]	8.9	0.8729
AT5G47550			Cystatin/monellin superfamily ...		Lus10017567 [exp]	11.4	0.8522
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10031460 [exp]	14.0	0.8263
AT4G38520			Protein phosphatase 2C family ...		Lus10024008 [exp]	15.2	0.7719
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10000947 [exp]	16.6	0.8162
AT3G16380		PAB6	poly(A) binding protein 6 (.1)		Lus10038840 [exp]	19.1	0.8395
AT1G71440		TFCE, PFI	TUBULIN-FOLDING COFACTOR E, tu...		Lus10002948 [exp]	21.5	0.7713
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10016312 [exp]	21.6	0.8058
AT3G24090			glutamine-fructose-6-phosphate...		Lus10026998 [exp]	22.2	0.8203

Compare expression of checked genes

Lus10010660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.