Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43820 624 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71060 173 / 7e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 173 / 1e-46 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15010 158 / 9e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77360 155 / 3e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65820 154 / 3e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 150 / 5e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G14820 149 / 9e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 149 / 1e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G64580 147 / 4e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001633 [exp] 182 / 1e-50 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015741 [exp] 171 / 4e-46 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 170 / 1e-45 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012328 [exp] 162 / 1e-42 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021991 [exp] 160 / 2e-42 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003461 [exp] 159 / 7e-42 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 159 / 2e-41 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034419 [exp] 157 / 2e-41 AT1G73400 684 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039021 [exp] 156 / 3e-41 AT3G49730 215 / 5e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G247200 [exp] 708 / 0 AT5G43820 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G114700 [exp] 184 / 1e-51 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050400 [exp] 171 / 3e-46 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G102700 [exp] 166 / 6e-45 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G121400 [exp] 165 / 8e-44 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050180 [exp] 163 / 2e-43 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 163 / 3e-43 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 160 / 3e-43 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G176100 [exp] 160 / 2e-42 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 160 / 2e-42 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10010662 pacid=23141671 polypeptide=Lus10010662 locus=Lus10010662.g ID=Lus10010662.BGIv1.0 annot-version=v1.0 ATGACATCCTTCTCTGATGCTCACCAGCTTAGCAAGTTGGATGACGCGGGACTCAGGAACCTCAATACCGCAAATCCCAACGAAAGCTACGTACTGGATA ACCTCTCTAATTTGCTGCCGGCTTCCCGTAAATTCCTCCTCAGCCAACGCGGCGATGGAGATTCCGATACGCAAGTCCAGAACAGAGTTGTCGTGGATGA GTTCCTATTGCCAGAAGACCGACTTCGAGGAGTATTCATGCAGAAGTTGAAAGGTAAGTACGCAGTCGAGACCGCCTTATCGAATGCTGGTGTTGATATA GGTGCTGATCTCATGGCTAAGGTTCTGGACAGAGGGAATTTAGGAGGTGAATCCATGGTTATGTTTTTCTACTGGGCAATAAAGCAGCCGAAGGTGGCTA GAGATATTCACAGTTACAATATTCTAATTAGGGCACTCACCAGGAGGAATTTTCTTGAGTTTGTGGTGAAAATCTTGCACGACTTGAAGGCTGATGGTAT AAGGCCCAACCTCGAGACTTTGTCACTGGTGATGGATGGATTGGTCAAGGATCATAGAGTGCGCAAGGCAATACATATGTTTGGAAATGGGGAAGAGTTT GGATTTGAGTGCAATACAAAGTCTCTGGATATCCTTTTGCAGTGTCTCTGTAGAAGGGGTCATGTAGGTGCTGCAGCTTCTTACTTCAATAAAATGAAAG GGAAGATACCCTTTGATGCCACCACATATAATATTATCATTGGAGGATGGTCGAAGTGTGGTAGAGTTGATGAGATTGAGAGGGTTTTGGAGGCAATGGT GGGTGATGGTTTTAGTCCTGATTGTTCCACATCTAGATTTCTGATTGTGGGCTTAGGAAAAGCTGGTAGGATTGAAGATGCTGTAGATGTTTTTGAAAAG TTGAAGGAGAAAGGTTGCATTCCAGATACATCCGTTTACAATGCAGTCATTGGTAATTTCATTTCGGTTGGAAAGTTTGATGAGTGCTTGATGTATTATA GGTGTTTATTGCGTAGCAATAATGAGCCAAATGCTGATACTTATACCAAACTGATCTATGCTTTTATCAAAGCTCGTAAAGTAGCAGATGCACTGGAAAT GTTCGATGAGATGGTAGGCCATGGTATTGTTCCTACAACAGGAACAATAACTTGTTTTTTAGCACGACTATGTAGCTTCGGTCCACCTCACGCTGCTATG TTGATTTACGAAAGTGCACGAAAAGCTGGTTGCAAAGTATCTCTTACTGCCTATAAGCTACTGTTGATGCGCTTGTCGAGATTTGGTAAATGTGGGATGC TGCTGAAGATATGGGATGACCTTCAAGCAAGTGGTTACGCTTCAGATGTGGAAGTTTATGAGTACGTAGTTAATGGACTTTGCAACATCGGGCAGCTTGA AAATGCAGTGCTTGTTATGGAGGAAGCTCTACGTGAAGGATTCTGCCCAAACAAGCTGATTTATAGTAAATTGAACAACAAATTACTTGATTCAAGTAAG GTCGAGAGGGCATACAAGCTATTTTTAAAGGTAAAAGTTGCACGCCAGGAAGATAATGCACGGAGGTTTTGGAGAAGGAATGGCTGGCACTTTTGA
AA sequence Show only first row Show all	>Lus10010662 pacid=23141671 polypeptide=Lus10010662 locus=Lus10010662.g ID=Lus10010662.BGIv1.0 annot-version=v1.0 MTSFSDAHQLSKLDDAGLRNLNTANPNESYVLDNLSNLLPASRKFLLSQRGDGDSDTQVQNRVVVDEFLLPEDRLRGVFMQKLKGKYAVETALSNAGVDI GADLMAKVLDRGNLGGESMVMFFYWAIKQPKVARDIHSYNILIRALTRRNFLEFVVKILHDLKADGIRPNLETLSLVMDGLVKDHRVRKAIHMFGNGEEF GFECNTKSLDILLQCLCRRGHVGAAASYFNKMKGKIPFDATTYNIIIGGWSKCGRVDEIERVLEAMVGDGFSPDCSTSRFLIVGLGKAGRIEDAVDVFEK LKEKGCIPDTSVYNAVIGNFISVGKFDECLMYYRCLLRSNNEPNADTYTKLIYAFIKARKVADALEMFDEMVGHGIVPTTGTITCFLARLCSFGPPHAAM LIYESARKAGCKVSLTAYKLLLMRLSRFGKCGMLLKIWDDLQASGYASDVEVYEYVVNGLCNIGQLENAVLVMEEALREGFCPNKLIYSKLNNKLLDSSK VERAYKLFLKVKVARQEDNARRFWRRNGWHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43820			Pentatricopeptide repeat (PPR)...		Lus10010662 [exp]	0	1
AT2G40116			Phosphoinositide-specific phos...		Lus10009894 [exp]	1.4	0.8372
					Lus10007227 [exp]	5.1	0.7580
AT4G10940			RING/U-box protein (.1)		Lus10001535 [exp]	6.0	0.7985
AT3G49350			Ypt/Rab-GAP domain of gyp1p su...		Lus10008839 [exp]	6.2	0.7975
AT5G15270			RNA-binding KH domain-containi...		Lus10017596 [exp]	8.5	0.7645
AT2G47830			Cation efflux family protein (...		Lus10009817 [exp]	10.5	0.7632
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10038464 [exp]	11.2	0.7763
AT3G17740			unknown protein		Lus10031899 [exp]	18.3	0.7533
					Lus10010661 [exp]	19.5	0.6923
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Lus10019630 [exp]	19.6	0.7228

Compare expression of checked genes

Lus10010662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.