Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61320 125 / 4e-31 FBD / Leucine Rich Repeat domains containing protein (.1) AT1G61330 112 / 1e-26 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT4G14103 59 / 5e-09 F-box/RNI-like superfamily protein (.1.2) AT3G03360 56 / 5e-08 F-box/RNI-like superfamily protein (.1) AT3G52680 56 / 5e-08 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT4G00160 53 / 4e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G42770 50 / 4e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G10400 49 / 4e-06 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT5G56420 49 / 4e-06 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G58900 49 / 5e-06 F-box/RNI-like superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034733 [exp] 616 / 0 AT1G61320 110 / 5e-26 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10011971 [exp] 583 / 0 AT1G61320 103 / 2e-23 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10018433 [exp] 457 / 2e-156 AT1G61330 109 / 2e-25 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10011254 [exp] 423 / 2e-143 AT1G61330 84 / 6e-17 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10042721 [exp] 151 / 6e-39 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10029682 [exp] 136 / 1e-38 ND / Lus10006726 [exp] 127 / 8e-34 AT1G61330 66 / 1e-12 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10028334 [exp] 97 / 3e-24 ND / Lus10039257 [exp] 74 / 4e-16 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G042900 [exp] 206 / 6e-60 AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.004G034500 [exp] 200 / 7e-58 AT1G61330 175 / 3e-49 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G024200 [exp] 51 / 1e-06 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.016G106600 [exp] 47 / 2e-05 AT5G56420 80 / 4e-16 F-box/RNI-like/FBD-like domains-containing protein (.1.2) Potri.015G002100 [exp] 45 / 9e-05 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G104300 [exp] 44 / 0.0002 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 44 / 0.0002 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.006G248600 [exp] 42 / 0.0009 AT5G41840 82 / 3e-16 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010664 pacid=23141686 polypeptide=Lus10010664 locus=Lus10010664.g ID=Lus10010664.BGIv1.0 annot-version=v1.0 ATGTCGCAATTTAACTCAATGCAGGTTGCTCCCAATGGCATTCGAAGAGGAGCATCTAGTTCCAGGTCCCAAAAGAAAGTCGTAGACAACACTGGCTTGC CAGACAATATGATTGAGGAAATCCTAAGCTTCCTCGATTTTAGAAAGCTAGTCCAATGTGGTATCATAGCTAAGCAATTCAGGTACTGTTACAAGTATGG TAAAAGGTTGGATTTTGATTTGTCCTTTCGAAGGACGTTAAGGGACATAAATCAATATGAATCGATAGTGAGCCAGATCATGGACCAACATGATGGGTGT AAGATCATGTCGCTCAAATTATGCTTCACCCCGGTCAACAATTTGGATAATCAAGCCATTGTGGCCCAGTGGATCAACAAGGCATTCCAAAAGGAAGTTG AAGAGCTCGAGCTAAATTTTGACCATAGCCTAGAGCCGTTCAGGGTGGCATTTGACCTCATATGCCATATCAAGACCTTAGAAGCCCTCCATTTGGTGTT TGTTGATATAGGGTCGCCGACCAAGGATTTCCAAGTCACCGGGCTTGGATTCCTAAAAATTTGCTCAATGAAGAGGGTGCATATTAAGGAGGTCATCCTC GATGCCCTGCTCAAAAGTTGCACAGAATTGGAGACTCTGGAGATCATCCAGTGCAACACTCCGCACCACGTCACATTTTCCGCTGAAAATCTAAATAAGT TTAAAAAGCTTAGACTTGCCAAATGCACGAACCTTAGGGAGATAACACTTGATGTACCTTCCCTTATCACGCTGCACTACTCCGGTCAACTCATTGCTTT CCACTTCGAAAATTGTGGAAATTTCGTCGATTTCTTACTCGACTTGAAGTCCTCAAGATGGTCAGTGATATATGCTAATCATTTCCTGCTCGGTAATTTG ATGCTCAACCTCCCGAGAATCGAGGTCATGACTACTACTAGTCTGTTGCCGGAGAGAATGTGGATGAAATTTGTGGAGGCGGGAACATGGGATATGTTAT ACTCTTTTCAAACGGTCAAAGAAATCAACTTGACTCTGCGACAATCAAGGCGATGTGGTCTATTCACAATTGTTTATTTCCTTGGCAAATTCCCTCGATG TGAGAGGCTTTTTATTGATGTTCGCAATTGGCTTGAGGACATGCCACCGACGTCGTTTCAAATTTATGTGCGGCGCGTATTCGCAGAAGCAAACGGCGGC AGCGTTAGGGACCACCCCCTTGTGCAGGAAGAGCAACAACCACCACCAGAATGGACAACATCGCATACCGCCCTAGCGAACCAGGGGCTAGCATCAAGCT TCCCACAATTGCGGCAGTTGAAGCTCACCGGTTTTCGGTTTGAACCGGACGAGATGGAGTTGTTATGCTACTTGCTCCGAAACGGGCACAATTTACAGAC AGTGGCCATCTTTCCCGCCTCGCCGCGCCACTGGAGGTCAACCGTGCCCGACGAAGTCGTGTTCAACCACAACCTCCGACCAATAATCACCTCTTCGAAT TTATGGATCCGAATATTTCAGCACAAGCAGGAAAAGGAGTTCTATCCTGCTAAACACCCGAAAGACTGGCAGAAGTGTTGA
AA sequence Show only first row Show all	>Lus10010664 pacid=23141686 polypeptide=Lus10010664 locus=Lus10010664.g ID=Lus10010664.BGIv1.0 annot-version=v1.0 MSQFNSMQVAPNGIRRGASSSRSQKKVVDNTGLPDNMIEEILSFLDFRKLVQCGIIAKQFRYCYKYGKRLDFDLSFRRTLRDINQYESIVSQIMDQHDGC KIMSLKLCFTPVNNLDNQAIVAQWINKAFQKEVEELELNFDHSLEPFRVAFDLICHIKTLEALHLVFVDIGSPTKDFQVTGLGFLKICSMKRVHIKEVIL DALLKSCTELETLEIIQCNTPHHVTFSAENLNKFKKLRLAKCTNLREITLDVPSLITLHYSGQLIAFHFENCGNFVDFLLDLKSSRWSVIYANHFLLGNL MLNLPRIEVMTTTSLLPERMWMKFVEAGTWDMLYSFQTVKEINLTLRQSRRCGLFTIVYFLGKFPRCERLFIDVRNWLEDMPPTSFQIYVRRVFAEANGG SVRDHPLVQEEQQPPPEWTTSHTALANQGLASSFPQLRQLKLTGFRFEPDEMELLCYLLRNGHNLQTVAIFPASPRHWRSTVPDEVVFNHNLRPIITSSN LWIRIFQHKQEKEFYPAKHPKDWQKC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61320			FBD / Leucine Rich Repeat doma...		Lus10010664 [exp]	0	1
					Lus10005514 [exp]	3.6	1.0000
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10014005 [exp]	4.0	1.0000
AT3G02960			Heavy metal transport/detoxifi...		Lus10015762 [exp]	4.9	1.0000
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	5.7	1.0000
AT3G60730			Plant invertase/pectin methyle...		Lus10015877 [exp]	6.9	1.0000
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10016888 [exp]	7.5	1.0000
AT5G27260			unknown protein		Lus10007175 [exp]	8.1	1.0000
AT5G12060			Plant self-incompatibility pro...		Lus10030964 [exp]	9.9	1.0000
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10017015 [exp]	10.2	1.0000
AT5G27260			unknown protein		Lus10032874 [exp]	10.4	1.0000

Compare expression of checked genes

Lus10010664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.