Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22400 516 / 0 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 514 / 3e-180 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 503 / 5e-176 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22340 502 / 1e-175 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 485 / 6e-169 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G78270 476 / 2e-165 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT5G59590 250 / 7e-78 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT3G46670 249 / 3e-77 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT5G59580 243 / 5e-75 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT2G36970 244 / 8e-75 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017542 [exp] 754 / 0 AT1G22400 499 / 4e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013652 [exp] 713 / 0 AT1G22360 359 / 3e-121 UDP-glucosyl transferase 85A2 (.1.2) Lus10007421 [exp] 711 / 0 AT1G22400 529 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10019364 [exp] 701 / 0 AT1G22400 523 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10031388 [exp] 549 / 0 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024583 [exp] 507 / 1e-177 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032220 [exp] 503 / 8e-176 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024584 [exp] 493 / 4e-172 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032218 [exp] 482 / 2e-167 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G021000 [exp] 580 / 0 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023151 [exp] 560 / 0 AT1G22400 521 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G022300 [exp] 557 / 0 AT1G22360 518 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023101 [exp] 555 / 0 AT1G22360 516 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G022000 [exp] 553 / 0 AT1G22360 499 / 1e-174 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G022500 [exp] 553 / 0 AT1G22400 514 / 3e-180 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.002G098400 [exp] 552 / 0 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G021100 [exp] 551 / 0 AT1G22360 505 / 5e-177 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G022600 [exp] 551 / 0 AT1G22400 515 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G021500 [exp] 550 / 0 AT1G22360 501 / 3e-175 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10010665 pacid=23141684 polypeptide=Lus10010665 locus=Lus10010665.g ID=Lus10010665.BGIv1.0 annot-version=v1.0 ATGAGCTCCAAGGATTCAGCCTCGCCGGCGGCCCCTCATGCCGTCTGTGTTCCATTTCCGGCTCAATCCCACATCAAGGCCACCCTTAAGTGTGCCAAGT TACTCCACAGCAGGGGATTCCACATCACTTTCGTAAACACTGAGTTCAACCACACCCGATTTCTCAATTCCGGCGGTCCTCATGCCCTCGACGGCCTACC GGATTTCCGATTCGCCACCATCCCCGACGGGATCCCTCACTCAGACCCTGGCGCCACGCAGGACGTACCTGCTATGTGCGACTCGGTCATGAACTTCATG ATGACACCGTTCAGACAACTTGTCCGGAAATTGAACGATCTGGAGGTCATGTCGGAGAGCGGCTGGCCGCCGGTGAGCTGCGTAGTTGCGGACGGGATGA TGGTGTTTGCTTTAGAAGTGGCGAGAGAGATTGGAGTGCCGTCGTTGAGCTATTGGACTTTTGCAGCTTGTGGTTTCATGGGATTCAAGCAATACCGCCC TCTCGTTGACCAAGGCGTCACCCCTTTCAAAGACGATAGCTATTTGACAAACGGATTCCTAGACAAAGCCGTAGAAGTTCCAGGAATGAAGAACATGCGT TACAGAGACCTGCCGACTTTCATCCAAACAACCGATCCCAAAGAACCAATTTTCCACAACCTAATGCTAGGCGCCGAGGCAGTCCCAATCGCCTCCGCTC TCCTACTCCACACATTTGAAGCCCTTGAAGTAGACGTCCTCGCCGCCCTCAACACAATGTACCCAGACCGCGTCTACACCGCCGGTCCAATGCAACTCCT CCTCAATCAAGCCAAACACACCTCCGACCTCGATTCAATCAGCTACAGCCTTTGGGAGGAGGACTCAAAGTGTCTTCGGTGGCTCGATTCCAAACCTGTC AATTCCGTCCTCTATGTCAATTTCGGAAGTGTCATGACCATGTCCAAGCACCACCTAATCGAATTCGCTATGGGTTTCGTCAACAGCGAGGTTTCCTTCC TGTGGGTCATCCGGCCTGACCTGGTTATTGGAGAATCAGCAGCTTTACCGCCGGAATTCCAGGAGAAGGCGGACAAAATTGGGCTGATCTCTGGGTGGTG CCCGCAGGAGGAGGTGCTGAACCATCCGGCGGTCGGTGGGTTTTTGACTCACTGTGGGTGGGGTTCGACGATTGAGACGCTGAGTGCCGGAGTTCCGGTG TTGTGCTGGCCGTTCTTCGCCGACCAGCAGACCAACTGTAAGTTTCTGTGTAAGGATTGGGGAATAGGAATGGAGATAGAGAAAGATGTGGACAAAGAAG CGGTGGAGGCACTGGTGAGGGAGCTGATGAAGGGGAAGAATGGTGACAAGATGCGGAACAAGGCTCGGGATTGGGCGAGGTTAGCGAGAGAAGCTACGGA GTCCGGCGGTTCATCCACCGTCGGATTTGATCGGGTGATTAATGAAGTGCTTTTGAAAAAATGA
AA sequence Show only first row Show all	>Lus10010665 pacid=23141684 polypeptide=Lus10010665 locus=Lus10010665.g ID=Lus10010665.BGIv1.0 annot-version=v1.0 MSSKDSASPAAPHAVCVPFPAQSHIKATLKCAKLLHSRGFHITFVNTEFNHTRFLNSGGPHALDGLPDFRFATIPDGIPHSDPGATQDVPAMCDSVMNFM MTPFRQLVRKLNDLEVMSESGWPPVSCVVADGMMVFALEVAREIGVPSLSYWTFAACGFMGFKQYRPLVDQGVTPFKDDSYLTNGFLDKAVEVPGMKNMR YRDLPTFIQTTDPKEPIFHNLMLGAEAVPIASALLLHTFEALEVDVLAALNTMYPDRVYTAGPMQLLLNQAKHTSDLDSISYSLWEEDSKCLRWLDSKPV NSVLYVNFGSVMTMSKHHLIEFAMGFVNSEVSFLWVIRPDLVIGESAALPPEFQEKADKIGLISGWCPQEEVLNHPAVGGFLTHCGWGSTIETLSAGVPV LCWPFFADQQTNCKFLCKDWGIGMEIEKDVDKEAVEALVRELMKGKNGDKMRNKARDWARLAREATESGGSSTVGFDRVINEVLLKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10010665 [exp]	0	1
AT4G16563			Eukaryotic aspartyl protease f...		Lus10008513 [exp]	6.0	0.7160
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10005570 [exp]	7.0	0.7238
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10041691 [exp]	16.3	0.6235
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Lus10035281 [exp]	20.0	0.6998
AT3G12150			unknown protein		Lus10021026 [exp]	21.4	0.6492
AT3G15810			Protein of unknown function (D...		Lus10038097 [exp]	22.5	0.6801
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10032938 [exp]	26.0	0.6787
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Lus10021965 [exp]	28.6	0.6536
AT3G52930			Aldolase superfamily protein (...		Lus10027717 [exp]	30.4	0.6887
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10041304 [exp]	35.8	0.6234

Compare expression of checked genes

Lus10010665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.