Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12380 118 / 6e-31 ANNAT8 annexin 8 (.1) AT1G35720 112 / 2e-28 ATOXY5, ANNAT1 annexin 1 (.1) AT5G10220 102 / 8e-25 ANN6, ANNAT6 ANNEXIN ARABIDOPSIS THALIANA 6, annexin 6 (.1) AT5G65020 93 / 1e-21 ANNAT2 annexin 2 (.1.2) AT1G68090 92 / 4e-21 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) AT5G10230 89 / 3e-20 ANN7, ANNAT7 annexin 7 (.1) AT2G38760 89 / 7e-20 ANN3, ANNAT3 annexin 3 (.1) AT2G38750 87 / 2e-19 ANNAT4 annexin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013654 [exp] 149 / 3e-45 ND 43 / 6e-06 Lus10024172 [exp] 124 / 8e-33 AT2G38760 349 / 1e-120 annexin 3 (.1) Lus10009225 [exp] 121 / 8e-32 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10003611 [exp] 119 / 3e-31 AT1G35720 476 / 1e-170 annexin 1 (.1) Lus10039550 [exp] 119 / 8e-31 AT2G38760 323 / 2e-109 annexin 3 (.1) Lus10008227 [exp] 117 / 3e-30 AT1G35720 476 / 9e-171 annexin 1 (.1) Lus10023530 [exp] 115 / 7e-30 AT1G68090 350 / 4e-121 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10024174 [exp] 109 / 3e-27 AT2G38760 361 / 4e-125 annexin 3 (.1) Lus10024054 [exp] 106 / 2e-26 AT5G65020 400 / 6e-141 annexin 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G055000 [exp] 270 / 2e-89 AT5G12380 144 / 1e-40 annexin 8 (.1) Potri.015G031800 [exp] 117 / 2e-30 AT1G68090 356 / 3e-123 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.012G041900 [exp] 114 / 4e-29 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.002G095600 [exp] 113 / 5e-29 AT1G35720 481 / 1e-172 annexin 1 (.1) Potri.001G277500 [exp] 110 / 5e-28 AT5G12380 442 / 3e-157 annexin 8 (.1) Potri.007G092500 [exp] 109 / 2e-27 AT5G65020 488 / 2e-175 annexin 2 (.1.2) Potri.005G075900 [exp] 104 / 9e-26 AT5G65020 472 / 3e-169 annexin 2 (.1.2) Potri.003G200700 [exp] 103 / 2e-25 AT5G12380 399 / 3e-140 annexin 8 (.1) Potri.001G024800 [exp] 99 / 1e-23 AT2G38760 395 / 1e-138 annexin 3 (.1) Potri.001G024900 [exp] 93 / 1e-21 AT2G38750 371 / 2e-129 annexin 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00191 [flax] [poplar] Annexin Annexin
Representative CDS sequence Show only first row Show all	>Lus10010666 pacid=23141661 polypeptide=Lus10010666 locus=Lus10010666.g ID=Lus10010666.BGIv1.0 annot-version=v1.0 ATGCAGCTAATCGAGCAACTATGCCAAGAAATCCACCATTTGCAACCAGCTGGTTTGGTCAGTGTTTTAGCCTGCATATCGAAGCTTCAGAGACAAATAG TCCGCGACAAGTACGAGGAAATGTACAAGGAAAGGATATCCGACCTGTTCCAGAGGTGGTGGCCTAACAAAGATGATGATGATCACAACATGGCTGAGGT TTTATCGATGTGGATGGCTGATCCGAATGAACGGGATGCTGTCATTGCCAGGAGGGCTCTTTTCGGGTACAAGTCATCATGTGCTAGTAGTTTACATGTC CCAAACTTCAAGGCCGTGGTTGAGATATTCGTGGGTCGAAAATCTAGTCATGTTGCGATGATCAAACGAGCTTACCATGCGAGGTTCAAGTCGCAGCTTG AGCATGATGTTGTGAGTCTTGAGCTGTCTAGTCCGCACCAGAAGGTTTTGGTAGCTTTGGATGCATCCCACAAGGCTCACCATGTGGAACTAAGCCAACA CATTGCTAAATGCGATGCGAAGCGGCTGTATGAAGCAACAGAGGTGGCTCAAGAGGCTCTGTTGCTTGAGATGCTTAGTAAAAGAAGTATTCCTCAGGTC AAACTCACCATTTCTCGCTACAACCAAATCTATGGACATGACTACTTAGAGAAGAAGTTAACGGAGAAGGGAAATGCCAAGGAGCTGGAAGCTCTAAGAA GCGCAATAGAATGCATGTGCAATGCTCCATCATATTATTCTCAGGCGCTGCATGCAATGTTGAAATGGAGCAACAAATCAAAATCTGCTGAGGAATTGAA GCGGGTGATGTTGAGCAGGGCAGAAGTGGACTTGGATGAAATTTCAAGGGATTATAAGGTCAGATATGGCAAGGAATTGAGAGAGATTGTCTGTGAGATG ATTCCTTCAGGGGATTGTAAGGAATTTTTACTTGCTGTGTTGGTTGGAACTGACAACAGTTAA
AA sequence Show only first row Show all	>Lus10010666 pacid=23141661 polypeptide=Lus10010666 locus=Lus10010666.g ID=Lus10010666.BGIv1.0 annot-version=v1.0 MQLIEQLCQEIHHLQPAGLVSVLACISKLQRQIVRDKYEEMYKERISDLFQRWWPNKDDDDHNMAEVLSMWMADPNERDAVIARRALFGYKSSCASSLHV PNFKAVVEIFVGRKSSHVAMIKRAYHARFKSQLEHDVVSLELSSPHQKVLVALDASHKAHHVELSQHIAKCDAKRLYEATEVAQEALLLEMLSKRSIPQV KLTISRYNQIYGHDYLEKKLTEKGNAKELEALRSAIECMCNAPSYYSQALHAMLKWSNKSKSAEELKRVMLSRAEVDLDEISRDYKVRYGKELREIVCEM IPSGDCKEFLLAVLVGTDNS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12380		ANNAT8	annexin 8 (.1)		Lus10010666 [exp]	0	1
AT3G44716			unknown protein		Lus10009406 [exp]	2.4	0.7850
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10018662 [exp]	6.2	0.7709
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006186 [exp]	6.3	0.7717
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10033024 [exp]	9.2	0.7378
AT3G48660			Protein of unknown function (D...		Lus10035198 [exp]	17.0	0.7227
					Lus10003607 [exp]	18.1	0.7296
AT2G31760		ATARI10, ARI10	ARABIDOPSIS ARIADNE 10, ARIADN...		Lus10000131 [exp]	19.8	0.6519
AT1G26470			unknown protein		Lus10037088 [exp]	20.9	0.6191
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10005092 [exp]	26.2	0.7415
AT5G44005			unknown protein		Lus10008219 [exp]	29.6	0.6780

Compare expression of checked genes

Lus10010666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.