Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04710 68 / 2e-12 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT2G03430 67 / 2e-12 Ankyrin repeat family protein (.1) AT3G09550 60 / 8e-10 Ankyrin repeat family protein (.1) AT5G02620 60 / 9e-10 ATANK1, ANK1 ankyrin-like1 (.1) AT1G07710 60 / 1e-09 Ankyrin repeat family protein (.1) AT3G12360 57 / 1e-08 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT5G40160 54 / 5e-08 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT2G31820 54 / 8e-08 Ankyrin repeat family protein (.1) AT5G13530 54 / 1e-07 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT2G28840 54 / 1e-07 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020272 [exp] 479 / 5e-168 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10007432 [exp] 316 / 8e-107 AT2G31800 69 / 3e-13 Integrin-linked protein kinase family (.1) Lus10002621 [exp] 263 / 3e-85 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10014522 [exp] 65 / 1e-11 AT5G40160 322 / 3e-109 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10003986 [exp] 64 / 9e-11 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1) Lus10015037 [exp] 63 / 1e-10 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1) Lus10006559 [exp] 61 / 5e-10 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10032165 [exp] 60 / 9e-10 AT5G40160 293 / 3e-98 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10003308 [exp] 59 / 2e-09 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G062000 [exp] 478 / 1e-167 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 100 / 2e-23 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 61 / 4e-10 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.013G042300 [exp] 59 / 1e-09 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.006G214500 [exp] 58 / 4e-09 AT3G12360 742 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.001G238800 [exp] 57 / 9e-09 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.010G212700 [exp] 56 / 3e-08 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.009G030000 [exp] 55 / 4e-08 AT2G28840 619 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.006G121500 [exp] 52 / 7e-08 AT3G09890 196 / 1e-63 Ankyrin repeat family protein (.1.2) Potri.007G145200 [exp] 54 / 8e-08 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0556 [flax] [poplar] PapD-like PF00635 [flax] [poplar] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Lus10010667 pacid=23141685 polypeptide=Lus10010667 locus=Lus10010667.g ID=Lus10010667.BGIv1.0 annot-version=v1.0 ATGGATCGGCTCATCAAATTGGAGCCGTCGAATGTTGCGGCGATCAGGATAGAGCCTGGCCACAAGTGCTCCGGCGAGCTCACTCTTCGCAACGTCATGT ACACTATGCCCGTAGCATTCCGGATTCAGCCACTCAACAAGAATCGCTACTCCATCAAACCTCAATCCGGCATCATTTCCCCTCTCGCAACTCAATCCGT CGAAATCACATACATCCTCCCTCCCGGCTCCAACCTACCCGACGCCTTTCCCGCTCCCGACGCATTCCCTCGCTCCGAGGATTCCTTCCTCCTTCACAGC GTCGTCGTCCCCGGCGCCGCCATCAAGGATCAAACCTCCGCTCTCGATGCCGTCCCAAACGACTGGTTCACCACCAGGAAGAAACAGGTGTTCCAGGACA GCGGCCTCAAAATCATGTTCGTCGGCTCTCCTGTCCTGGCTCAGCTGGTCATCAACGGTGCTATGGACGAGATACGTGATGTTCTTGAGCGGAGCGATTC CTCCTGGAAGGCGGCGGATTCAGTGGATCCTCACGGCGAGCCTCTTCTCCATATTGCGATTTCACAAGGAAGGCCGGATATCGTTCAATTGTTACTCGAA TTCGGACCGGATGTTGAGTTCAGGAGCCGGTCCGGGTCCACTCCGTTGGAAGTTGCTGCCGGGTCGGGTGAGGCTTTGATTGTGGAGCTTCTATTGGCTC ACAGAGCCAACACTGAACGATCGGAAACTTCCTCGTGGGGACCAATCCATCTAGCAGCCGGAGGGGGACACCTGGAGGTCTTGAGGCTTCTCTTGCTGAA AGGAGCCAACGTTGATTCCTTCACTAAAGACGGAAACACTGCACTACACATCGCCGTCGAACAGCGGCGGCGGGACTGTGCGCGGCTGCTCTTGGCAAGC GGAGCGAGGGCGGATGTGCGGAACGGGAGAGATGGAGACACGGCGTTGCACATCGCAGCAAGGCTAGGCGACGAGAATATGGTGAGAGTCGGCGCGTGCG TAGCGGGGTGGCAGGCGGTCTAG
AA sequence Show only first row Show all	>Lus10010667 pacid=23141685 polypeptide=Lus10010667 locus=Lus10010667.g ID=Lus10010667.BGIv1.0 annot-version=v1.0 MDRLIKLEPSNVAAIRIEPGHKCSGELTLRNVMYTMPVAFRIQPLNKNRYSIKPQSGIISPLATQSVEITYILPPGSNLPDAFPAPDAFPRSEDSFLLHS VVVPGAAIKDQTSALDAVPNDWFTTRKKQVFQDSGLKIMFVGSPVLAQLVINGAMDEIRDVLERSDSSWKAADSVDPHGEPLLHIAISQGRPDIVQLLLE FGPDVEFRSRSGSTPLEVAAGSGEALIVELLLAHRANTERSETSSWGPIHLAAGGGHLEVLRLLLLKGANVDSFTKDGNTALHIAVEQRRRDCARLLLAS GARADVRNGRDGDTALHIAARLGDENMVRVGACVAGWQAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03430			Ankyrin repeat family protein ...		Lus10010667 [exp]	0	1
AT1G52700			alpha/beta-Hydrolases superfam...		Lus10026054 [exp]	10.3	0.7508
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026906 [exp]	10.4	0.7681
AT2G22790			unknown protein		Lus10011575 [exp]	26.3	0.7462
AT5G41920	GRAS		GRAS family transcription fact...		Lus10040734 [exp]	73.3	0.6476
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10019927 [exp]	75.2	0.6226
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10041210 [exp]	78.6	0.6897
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10020131 [exp]	87.4	0.6282
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10038203 [exp]	92.8	0.6761
AT5G25170			PPPDE putative thiol peptidase...		Lus10041021 [exp]	122.8	0.6131
					Lus10014941 [exp]	139.7	0.6397

Compare expression of checked genes

Lus10010667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.