Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21720 758 / 0 Plant protein of unknown function (DUF639) (.1) AT1G48840 306 / 2e-94 Plant protein of unknown function (DUF639) (.1) AT3G18350 295 / 8e-90 Plant protein of unknown function (DUF639) (.1) AT5G23390 288 / 3e-87 Plant protein of unknown function (DUF639) (.1) AT1G71240 164 / 3e-42 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007431 [exp] 1266 / 0 AT2G21720 767 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10013865 [exp] 320 / 2e-99 AT3G18350 897 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10026581 [exp] 301 / 6e-92 AT1G48840 870 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10020973 [exp] 296 / 1e-90 AT1G48840 899 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10010155 [exp] 283 / 4e-85 AT5G23390 781 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10002408 [exp] 171 / 2e-44 AT1G71240 941 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Lus10027905 [exp] 127 / 4e-30 AT1G71240 806 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G062700 [exp] 912 / 0 AT2G21720 839 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.012G055800 [exp] 328 / 3e-102 AT1G48840 894 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.015G046500 [exp] 320 / 2e-99 AT1G48840 942 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.008G003000 [exp] 311 / 7e-96 AT5G23390 730 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.001G210200 [exp] 161 / 2e-41 AT1G71240 968 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF04842 [flax] [poplar] DUF639 Plant protein of unknown function (DUF639)
Representative CDS sequence Show only first row Show all	>Lus10010668 pacid=23141703 polypeptide=Lus10010668 locus=Lus10010668.g ID=Lus10010668.BGIv1.0 annot-version=v1.0 ATGAAGCACCTCTCTACCATCGCCAATGACATTGTGAACAGATGCGCCCTAAGGGTGGAGAAAAGTGAGGAGGAACTGGTGGAAGAGTTTGAAAGAGAAG TATGGAAGGAGGAAACAGGGGATTACTCGAGGAAGTTTATTGAATTCTGTTGCTCGAAGGCATTGAGGAAAGATTGCCAATTCATAGAGGAGAAAATCGT TGATGGATCCTTTTCACGCCTCACTTTCGACATGATGCTCGCCTGGGAAACTCCCACTTCCATCCACGAGCAATCTATCTCCGAAAATGTAGGAAAGGGT TTAGAAGACAGGAGGAAGATACCATCAAAAGTAACTGGAGAAACTGATGAAATCCCACTCTTCTACACTGACCTTATGCCCCTCCTTGTTGACGAGGAGG CCAGTGTGGGGGAAGACGCAGTTGTTTGGTTGGGAACATTGGTCCCATTGGTCGTGGATTTCGTCAATGCCAGGTTTACATTCGAGACGCTCACCGCAGC TACTGCCCACCGCCTCTTCTACCCTGCCTACGATAAGTTCTTGAAAGAAATTAACCAAAGCATAAAGAATCTGCAGCAACAAACTAAACCCAAAGGAATA CAACTTGCTGATGAAGAGTTCATACTACACGTTGATGGCACCGCCAGTTCCCAGAGAGTTGTGCGCCACATTGGTGGCACCAGCTGGCCAGGTAGGCTTA CACTTACCAATTACGCTCTCTACTTCGAGGCATCTGGGGTGATCACATATGAAGATGCTCTTAAAATCGACCTCTCTAACGATACCAAACACAGCATCAA AGCCACTGCCACCGGCCCGTGGGGTGCTCCGTTTTTTGACAGGGCCATCGTCTATGAATCCCCTGAATCCTCGGAAGGAATTGTTCTGGAGTTTCCAGAG ATGACAAGCTCCACCAGACGCGATCATTGGCTTGCGCTCATCAAGGAGATCATCTTAATGCACCAGTTCCTGTCGAGGTACAATGTGGAATGTCCGATGC AGGCATGGGAGATACATTCGAGGACAATACTCGGGATAGTGAGGCTCCACGCAGCTAGAGAGCTGCTGCGAATAACGCCACCGGACCCTACCAAGTTCCT CATCTTCGCCTTGTATGACGAGCTGCCTAAGGGAGACTACGTGCTGGATCAGCTTGCAGCGAGCATAGAGAAGGCCGACAGCGGACACCCGTGCAGTGTC AGTTCACTCCTGAGGAATATAAATGTATCGCAGTTGCTTACGTCTAGTGGAGAAATTACAAAGGGTAAAGAGGAAGTTGTGAATAATTTTGCTGACGGAG GAGACGATGAGATACGTTCCTCTTTAGAGGATGCAGTTGATAGAGTGAAGGAGGAAGCTAAGGAGGTTGACATGGCCAAGGCCACTGCAGAGGGGTTAAA AGAGGAAGGGATTGGTGAAAGCGCTCAAGTCCTTATGGAACTGCTGAAGCCGATCAGAGATCTGCTACCATGGTTTCTTGGGATCATTTCGTGGGAGAGG CCATTGGCATCGCTTCTTGTATTCGTCACAACTATCATAATCATCTACAAGGAGTGGGTGGGGAAAGCATTAGCTGTTTTCTTGGTCCGGGGTGCATTGA GGATACTGCAAGCTAGACGAGGGCGATCGCACAAGCAAAGCAACGAGATAGTAGTGTACACCGGGGGAAGAGAACAAAAGAGCACAACTGAGAGCATTGT GGCGGCTCAGTTCGGATTGAGAACTGTACACGAGGTGATGCAAGCAGCTAACATAGCTATACTAAAGATTTGGTCTCTGATGTCTGCCAAAGCTCCAAAG GTGCAATCAGATATGGCGATGGTGGCCATGGGTTCCTTGGCAATCATATTGGCTGTAATTCCTTTGAAGTACATCCTAATGGGTGGAGTTGTATACTACG GGATTATGACATCGAAACTAGGGAAGCGAATGGAGAATGATCAGGGGAATAGAAGGCTAAAGGAATGGTGGGATTCAATTCCAGTCGTCCATGTCCGTAT CGTTGATGAACCACCTCCGCCTTCTCCTCCGCTCCCAGAGAAGAAGGATACTTAA
AA sequence Show only first row Show all	>Lus10010668 pacid=23141703 polypeptide=Lus10010668 locus=Lus10010668.g ID=Lus10010668.BGIv1.0 annot-version=v1.0 MKHLSTIANDIVNRCALRVEKSEEELVEEFEREVWKEETGDYSRKFIEFCCSKALRKDCQFIEEKIVDGSFSRLTFDMMLAWETPTSIHEQSISENVGKG LEDRRKIPSKVTGETDEIPLFYTDLMPLLVDEEASVGEDAVVWLGTLVPLVVDFVNARFTFETLTAATAHRLFYPAYDKFLKEINQSIKNLQQQTKPKGI QLADEEFILHVDGTASSQRVVRHIGGTSWPGRLTLTNYALYFEASGVITYEDALKIDLSNDTKHSIKATATGPWGAPFFDRAIVYESPESSEGIVLEFPE MTSSTRRDHWLALIKEIILMHQFLSRYNVECPMQAWEIHSRTILGIVRLHAARELLRITPPDPTKFLIFALYDELPKGDYVLDQLAASIEKADSGHPCSV SSLLRNINVSQLLTSSGEITKGKEEVVNNFADGGDDEIRSSLEDAVDRVKEEAKEVDMAKATAEGLKEEGIGESAQVLMELLKPIRDLLPWFLGIISWER PLASLLVFVTTIIIIYKEWVGKALAVFLVRGALRILQARRGRSHKQSNEIVVYTGGREQKSTTESIVAAQFGLRTVHEVMQAANIAILKIWSLMSAKAPK VQSDMAMVAMGSLAIILAVIPLKYILMGGVVYYGIMTSKLGKRMENDQGNRRLKEWWDSIPVVHVRIVDEPPPPSPPLPEKKDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21720			Plant protein of unknown funct...		Lus10010668 [exp]	0	1
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009959 [exp]	2.6	0.9409
					Lus10041665 [exp]	2.8	0.9222
AT1G02790		PGA4	polygalacturonase 4 (.1)		Lus10003782 [exp]	3.5	0.9242
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10026008 [exp]	7.9	0.9326
AT5G18960	FAR1_related	FRS12	FAR1-related sequence 12 (.1)		Lus10023137 [exp]	9.2	0.8622
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10024228 [exp]	20.3	0.8668
AT5G23160			unknown protein		Lus10013437 [exp]	22.5	0.8772
AT3G12620			Protein phosphatase 2C family ...		Lus10019893 [exp]	22.8	0.8635
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10030515 [exp]	23.2	0.8699
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10004215 [exp]	24.5	0.8380

Compare expression of checked genes

Lus10010668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.