Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03773 200 / 6e-67 HSP20-like chaperones superfamily protein (.1.2) AT4G02450 114 / 6e-32 HSP20-like chaperones superfamily protein (.1.2) AT1G30070 42 / 4e-05 SGS domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002623 [exp] 191 / 3e-63 AT3G03773 165 / 2e-53 HSP20-like chaperones superfamily protein (.1.2) Lus10020270 [exp] 197 / 6e-61 AT5G55000 430 / 2e-149 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Lus10000340 [exp] 124 / 3e-35 AT4G02450 120 / 5e-34 HSP20-like chaperones superfamily protein (.1.2) Lus10024119 [exp] 119 / 5e-35 AT3G03773 121 / 2e-36 HSP20-like chaperones superfamily protein (.1.2) Lus10026136 [exp] 117 / 6e-33 AT4G02450 122 / 1e-34 HSP20-like chaperones superfamily protein (.1.2) Lus10008680 [exp] 119 / 1e-32 AT5G04940 216 / 8e-64 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Lus10038500 [exp] 40 / 0.0003 AT1G30070 290 / 1e-100 SGS domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G062600 [exp] 209 / 2e-70 AT3G03773 191 / 3e-63 HSP20-like chaperones superfamily protein (.1.2) Potri.019G038550 [exp] 205 / 8e-69 AT3G03773 197 / 5e-66 HSP20-like chaperones superfamily protein (.1.2) Potri.002G061500 [exp] 111 / 2e-31 AT4G02450 123 / 4e-35 HSP20-like chaperones superfamily protein (.1.2) Potri.005G199700 [exp] 111 / 3e-31 AT4G02450 127 / 9e-37 HSP20-like chaperones superfamily protein (.1.2) Potri.011G085100 [exp] 39 / 0.0005 AT1G30070 285 / 2e-98 SGS domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF04969 [flax] [poplar] CS CS domain
Representative CDS sequence Show only first row Show all	>Lus10010669 pacid=23141672 polypeptide=Lus10010669 locus=Lus10010669.g ID=Lus10010669.BGIv1.0 annot-version=v1.0 ATGGCAGTCGATTACGGTCGAGGAATCAGTCGGAATCCGGAAGTTCTCTGGGCCCAGCGATCCGACAAGGTATACCTGACGGTAGCGTTGCCGGACGCTA AGGACATATCTGTGAAATGTCAGCCCCAGGGTTTGTTCAGTTTCTCCGCTAGCGGGATTCAGGGCGAGTCCTTCGAGCTCAATCTCCAGCTCTACGCTTC CATTCTTCCCGAGAAGTGCAAGACTAATGTTGGGTTGAGGAACATAATCTGCTCCATCCAGAAAGAGGAGAAAGGGTGGTGGAGGAGACTGTTGAAATCA GAAGAGAAGCCTGCACCTTACATTAAAGTTGATTGGCATAGGTGGATCGATGAAGATGATGAAGGACCTGCTTCTGATACACTTTCGGACGACGATGAAG CTGAGTATGATGAGGACGCTGAAACTAGTGACGATGAAGGACTGCTTTACCTTCCTGATCTAGAGAAGGCGAGGAGAAGCTGA
AA sequence Show only first row Show all	>Lus10010669 pacid=23141672 polypeptide=Lus10010669 locus=Lus10010669.g ID=Lus10010669.BGIv1.0 annot-version=v1.0 MAVDYGRGISRNPEVLWAQRSDKVYLTVALPDAKDISVKCQPQGLFSFSASGIQGESFELNLQLYASILPEKCKTNVGLRNIICSIQKEEKGWWRRLLKS EEKPAPYIKVDWHRWIDEDDEGPASDTLSDDDEAEYDEDAETSDDEGLLYLPDLEKARRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03773			HSP20-like chaperones superfam...		Lus10010669 [exp]	0	1
AT3G11590			unknown protein		Lus10017001 [exp]	1.7	0.8652
AT1G26160			Metal-dependent phosphohydrola...		Lus10035072 [exp]	2.2	0.8105
AT3G11590			unknown protein		Lus10021324 [exp]	3.2	0.8342
					Lus10006886 [exp]	8.1	0.7775
AT2G23950			Leucine-rich repeat protein ki...		Lus10019963 [exp]	11.5	0.8175
AT5G43140			Peroxisomal membrane 22 kDa (M...		Lus10018700 [exp]	11.8	0.7683
AT4G28600		NPGR2	no pollen germination related ...		Lus10023748 [exp]	16.7	0.7950
AT2G30933			Carbohydrate-binding X8 domain...		Lus10007342 [exp]	18.0	0.7718
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10005228 [exp]	18.8	0.8160
AT3G20650			mRNA capping enzyme family pro...		Lus10039035 [exp]	19.0	0.7555

Compare expression of checked genes

Lus10010669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.