Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03960 952 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT3G18190 243 / 2e-73 TCP-1/cpn60 chaperonin family protein (.1) AT3G20050 216 / 4e-63 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT5G26360 210 / 7e-61 TCP-1/cpn60 chaperonin family protein (.1) AT3G11830 210 / 1e-60 TCP-1/cpn60 chaperonin family protein (.1.2) AT1G24510 201 / 2e-57 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G20890 181 / 3e-50 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 155 / 5e-41 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 154 / 2e-40 TCP-1/cpn60 chaperonin family protein (.1) AT4G08640 95 / 2e-22 ATP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007430 [exp] 1109 / 0 AT3G03960 952 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10002625 [exp] 1049 / 0 AT3G03960 936 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10008670 [exp] 228 / 9e-68 AT3G18190 967 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10037214 [exp] 218 / 1e-63 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10008406 [exp] 216 / 3e-63 AT3G11830 1011 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10042966 [exp] 215 / 2e-62 AT3G20050 991 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10034682 [exp] 215 / 2e-62 AT5G26360 1016 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10021150 [exp] 214 / 2e-62 AT5G26360 1046 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10017853 [exp] 214 / 3e-62 AT5G26360 1041 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G034200 [exp] 997 / 0 AT3G03960 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.013G058500 [exp] 996 / 0 AT3G03960 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.015G042600 [exp] 236 / 7e-71 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.012G051300 [exp] 236 / 8e-71 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.014G058500 [exp] 226 / 4e-67 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.009G157400 [exp] 219 / 5e-64 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.002G142700 [exp] 216 / 3e-63 AT3G20050 994 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.004G195300 [exp] 215 / 1e-62 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.T046300 [exp] 207 / 1e-59 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 207 / 1e-59 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10010670 pacid=23141702 polypeptide=Lus10010670 locus=Lus10010670.g ID=Lus10010670.BGIv1.0 annot-version=v1.0 ATGGGTTTCTCAATGCAGCCGTACGGTATACAATCAATGCTGAAGGAGGGGCACAAGCATCTCTCCGGTCTAGACGAAGCCGTCATCAAGAACATCGACG CTTGCAAGCAGCTCTCCACCATCACCCGCACCTCCCTCGGCCCTAATGGTATGAATAAAATGGTTATCAACCATCTGGACAAGCTTTTTGTCACCAACGA TGCCGCAACCATTGTAAACGAGCTTGAAGTTCAGCATCCTGCTGCCAAGATTTTGGTACTGGCTGCGAAGGCCCAGCAGGAAGAAATAGGCGATGGAGCT AACTTGACCATCTCTTTTGCCGGTGAGCTCCTTCAGAATGCTGAAGAGCTTATCAGGATGGGCCTTCATCCTAGTGAGATCATCAGTGGCTACACCAAGG CCATTGCCAAGGCGATTGAAATATTGGATGAATTGGTAGAGAAAGGTTCTGAAACAATGGATGTCAGGGACAAGGACCAAGTTGTTTCTCGCATGAGGGC TGCTGTTGCTAGCAAGCAATTTGGACAAGAAGATATCTTGTGCAGTCTTATAGCTGATGCCTGCATACAAGTTGTTCCCAAGAACCCAGCAAGCTTCAAT GTGGATAATGTCCGTGTTGCAAAGCTTGTTGGAGGAGGTCTGAACAACAGTACCATAGTTCGTGGAATGGTATTGAAAAGTGATGCTGTTGGTACAATAA AGAAAATAGAGCAGGCCAAGGTTGCTGTATTTGTTGGCGGTGTTGATACATCTGCAACTGAGACAAAAGGAACTGTCCTAATTAACACCGCTGAGCAGCT ACAAAATTATGCAAAAACTGAAGAAGCTAAAGTTGAGGAGCTTATCAAGGCGGTCGCTGATTCTGGTGCTAAAGTTATTGTCAGCGGTGGATCTGTTGGA GAGATGGCCCTACATTTCTGCGAACGATACAAGCTCATGGTTTTGAAGATTAGTTCAAAATTTGAATTGAGACGATTTTGTCGCACTACTGGTTCTATTG CAATGTTGAAGCTTAGCGCACCAAATCCAGATGATTTAGGACATGTGGATTCTGTTTCAGTTGAGGAGATTGGTGGAGCAAGGGTCACTATTGTGAGAAA TGAAGAAGGCGGAAACTCAATCAGTACTGTTGTCTTGCGAGGAAGCACTGAAAGTATATTGGATGATCTTGAAAGAGCTGTTGATGATGGAGTTAATACC TACAAAGCAATGTGCAGAGATAGTCGCACAGTACCTGGAGCAGCAGCTACTGAAATTGAGTTAGCTAGACGAGTGAAGGAGTTCTCGTTTAAAGAAACAG GATTGGATCAGTATGCCATTGCAAAGTTTGCAGAAAGTTTTGAGATGGTTCCAAACACACTTGCTGAGAACGCCGGCCTTGATGCAATGGAGATAATATC TTCTCTTTATGCTGAACATGCATCTGGAAATGCAAAAGTAGGCATCGACTTAGAGGAAGGTGTTTGCAAGGATGTAACGGTGACAAATGTCTGGGACCTC CACGTGACCAAGTATTTTGCCCTCAAATATGCTGCTGATGCTGCCTGCACTGTGTTGCGAGTAGATCAGATTATAATGGCGAAACAAGCAGGTGGGCCGA GGAGAGACCAAGCTGCAGCAGCAGGAGCAGGAATGGATGAAGACTAG
AA sequence Show only first row Show all	>Lus10010670 pacid=23141702 polypeptide=Lus10010670 locus=Lus10010670.g ID=Lus10010670.BGIv1.0 annot-version=v1.0 MGFSMQPYGIQSMLKEGHKHLSGLDEAVIKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKILVLAAKAQQEEIGDGA NLTISFAGELLQNAEELIRMGLHPSEIISGYTKAIAKAIEILDELVEKGSETMDVRDKDQVVSRMRAAVASKQFGQEDILCSLIADACIQVVPKNPASFN VDNVRVAKLVGGGLNNSTIVRGMVLKSDAVGTIKKIEQAKVAVFVGGVDTSATETKGTVLINTAEQLQNYAKTEEAKVEELIKAVADSGAKVIVSGGSVG EMALHFCERYKLMVLKISSKFELRRFCRTTGSIAMLKLSAPNPDDLGHVDSVSVEEIGGARVTIVRNEEGGNSISTVVLRGSTESILDDLERAVDDGVNT YKAMCRDSRTVPGAAATEIELARRVKEFSFKETGLDQYAIAKFAESFEMVPNTLAENAGLDAMEIISSLYAEHASGNAKVGIDLEEGVCKDVTVTNVWDL HVTKYFALKYAADAACTVLRVDQIIMAKQAGGPRRDQAAAAGAGMDED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10010670 [exp]	0	1
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10008406 [exp]	1.4	0.9661
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10014511 [exp]	2.8	0.9560
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10037360 [exp]	3.5	0.9571
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10041467 [exp]	4.9	0.9386
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10034682 [exp]	5.0	0.9541
AT5G25757			RNA polymerase I-associated fa...		Lus10038622 [exp]	6.0	0.9563
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10026397 [exp]	6.2	0.9383
AT2G05790			O-Glycosyl hydrolases family 1...		Lus10015151 [exp]	7.1	0.9251
AT5G53480			ARM repeat superfamily protein...		Lus10041453 [exp]	7.3	0.9507
AT3G03130			unknown protein		Lus10009977 [exp]	8.8	0.9501

Compare expression of checked genes

Lus10010670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.