Plant FIBer expression Database

Lus10010672 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G54385 555 / 0 ARM repeat superfamily protein (.1.2)
AT3G03970 327 / 9e-105 ARM repeat superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007428
[exp]
1122 / 0 AT1G54385 549 / 0.0 ARM repeat superfamily protein (.1.2)
Lus10002627
[exp]
521 / 5e-180 AT1G54385 394 / 7e-131 ARM repeat superfamily protein (.1.2)
Lus10020266
[exp]
501 / 4e-172 AT1G54385 402 / 4e-134 ARM repeat superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G033900
[exp]
700 / 0 AT1G54385 608 / 0.0 ARM repeat superfamily protein (.1.2)
Potri.013G058700
[exp]
692 / 0 AT1G54385 599 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10010672 pacid=23141676 polypeptide=Lus10010672 locus=Lus10010672.g ID=Lus10010672.BGIv1.0 annot-version=v1.0
ATGGGTAGGAGCCTGAGTCCATTGAAGAGAGAGTTGGCAAATCTTGACAAAGATGCCGAGAGTCGGAAATCAGCGATGAAGGCGCTGAAATCATACGTCA
AAGACATGGATTCTAGGGCCATTCCAATTTTTCTTGCCCAGGTTTCAGAGACTAAAGAAACTGGTGCTATATCTGGAGAATTCACCATCTCACTTTACGA
AGTCCTTGCCCGTGTCCATGGAGTCAAGATTGTTTCTCAAATCGACCGTATCATGACTACTGTCATCAAGACGTTGTCTGCAAGTGCAGTGTCTTTCCCT
CTCCAACAGGCGTGCTCCAAAGTTGTGCCTGCTATTGCAAGGTATGGCATCGAGCCCACAACTCCAGAAGTCGAGAAGAGGCGCATAATTCATTCCCTTT
GCAAGCCTCTTGTTGAAGCTCTTCTGGGTGCTCAAGAAAGTCTTACCTCAGGGGCTGCCCTTTGCTTGAAGGCTCTTGTGGACTCTGATAATTGGAGATT
TGCTTCTGATGAGATGGTGAACAAAGTCTGCCAGAATGTAGCTGTGGCGCTTGAGGAGCAGTCAACACAATCTAACTCCCATATGGGATTGGTTATGGCT
TTATCAAAGCGTAATGCTTTGATAGTTGAACCTTATGCAAGGTTGTTGATCCGGACTGGTTTGTCCATCCTGAATAATGCTGGTGGTGGTTTGCAAGACG
GTAATTCCCAGACGCGTATGTCAGCTATCCAAATGATCAATTTCATGATGAAGTGCTTGGACCCGAGAAGTGTATTCTCCATGCTTGATTTAATCATTCT
GGAGATGGAGAAATGTCAGTCAGATCAACAGATGGCATTTGTGAAAGGAGCTGCTTTTGAAGCTTTGCAAACAGCAAAGAAAATTTATTCAGACGAAGCA
TCAAAGTTTGACAAGAGTTCTGGTGGTTCTGTCACCGGGTCTAACTTCAGTAAAAGGGATTCTAGAAGGAGAACAAATCTGTCCAGTCCGGAGTCGCAGA
CTCTTGGCTCTTTCATGGAGGAGTATGACTCTATGGTTGAGTCACCTTTAACAAGAACTCCAGTCTCTCATGCCCTTGGGTATGACTGTGGCTGTGAGTA
TGACAGCAGGAGTGTCAACCGTAAGCTATGGAGCCTTGAAAATGGAAGGGGGGATGTTTCGCTTAAAGATGGGTTATTTTCACAACTGACTCATGGAACT
CCTATCACTAATAGCTCGACTGAATATGAGGGAACTCGTGCTGCCGAGTTTTCGGGCTTCTTGCCGACAAGTCCTATAAACGGGCTGCCTAGGAGCTGCA
CACCCAGTCCTCAGAGGTCACGTACGCACCTAAATGTCGATAACATGAGCATCTTCACAAGCCCTAGGAAGCTCATCCGCTCACTACAGGATTCTAATGT
TGTCGATCCGGAATTTAACGAGAAGAATAGCAGGCGGTTCAGAAGCCCGTGCACATGCAATTGCGATAGCAGGCCAACTTCAAAGTTGAACCAAAGGGAG
TTTGACAGGAACGATGACTCCAATGAGAATGAAGAGTCATATGTTGTTGAGAAGAAACATGCGGATGCATCTGAATCAGTTTCATCAACAGTTGATGTTA
CTAGCAACGCAGTGGAAGTTGCAGACATGAACCGCAAAGCGGGTGCTGCTGCCGAGAAGAAATCCAACTTGCAAAGCCAAAGCATTAAGAAGCAGTATTG
GAAAAGCGATGCTAGGTTACTTGTTACCTTTGTTTTGGCTATTTTATCAGGTTTTGCATCATTGATTTTGTTTGATGGTTCTGAGCAAGGCCAATTTCTT
ACTCCGACATAG
AA sequence
>Lus10010672 pacid=23141676 polypeptide=Lus10010672 locus=Lus10010672.g ID=Lus10010672.BGIv1.0 annot-version=v1.0
MGRSLSPLKRELANLDKDAESRKSAMKALKSYVKDMDSRAIPIFLAQVSETKETGAISGEFTISLYEVLARVHGVKIVSQIDRIMTTVIKTLSASAVSFP
LQQACSKVVPAIARYGIEPTTPEVEKRRIIHSLCKPLVEALLGAQESLTSGAALCLKALVDSDNWRFASDEMVNKVCQNVAVALEEQSTQSNSHMGLVMA
LSKRNALIVEPYARLLIRTGLSILNNAGGGLQDGNSQTRMSAIQMINFMMKCLDPRSVFSMLDLIILEMEKCQSDQQMAFVKGAAFEALQTAKKIYSDEA
SKFDKSSGGSVTGSNFSKRDSRRRTNLSSPESQTLGSFMEEYDSMVESPLTRTPVSHALGYDCGCEYDSRSVNRKLWSLENGRGDVSLKDGLFSQLTHGT
PITNSSTEYEGTRAAEFSGFLPTSPINGLPRSCTPSPQRSRTHLNVDNMSIFTSPRKLIRSLQDSNVVDPEFNEKNSRRFRSPCTCNCDSRPTSKLNQRE
FDRNDDSNENEESYVVEKKHADASESVSSTVDVTSNAVEVADMNRKAGAAAEKKSNLQSQSIKKQYWKSDARLLVTFVLAILSGFASLILFDGSEQGQFL
TPT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G54385 ARM repeat superfamily protein... Lus10010672
[exp]
0 1
AT1G76310 CYCB2;4 CYCLIN B2;4 (.1) Lus10016015
[exp]
1.4 0.9646
AT2G36200 P-loop containing nucleoside t... Lus10017016
[exp]
2.8 0.9537
AT1G54385 ARM repeat superfamily protein... Lus10007428
[exp]
2.8 0.9285
AT2G26760 CYCB1;4, CYC3 Cyclin B1;4 (.1) Lus10026803
[exp]
9.4 0.9242
AT2G37420 ATP binding microtubule motor ... Lus10025304
[exp]
9.8 0.9471
AT1G08560 KN, ATSYP111, S... KNOLLE, syntaxin of plants 11... Lus10042527
[exp]
10.5 0.9388
AT2G32590 EMB2795 EMBRYO DEFECTIVE 2795, unknown... Lus10030028
[exp]
10.6 0.9465
AT1G03470 Kinase interacting (KIP1-like)... Lus10005933
[exp]
11.2 0.9209
AT3G25980 MAD2 MITOTIC ARREST-DEFICIENT 2, DN... Lus10006436
[exp]
11.5 0.9125
AT1G04030 unknown protein Lus10029611
[exp]
15.8 0.9094

Lus10010672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.