Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13180 59 / 3e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G18210 57 / 1e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03980 53 / 3e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G04000 50 / 5e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024465 [exp] 64 / 4e-13 ND / Lus10000977 [exp] 64 / 1e-11 ND / Lus10008258 [exp] 63 / 1e-11 ND / Lus10020265 [exp] 63 / 1e-11 AT3G03980 359 / 5e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10000325 [exp] 60 / 2e-11 ND / Lus10012428 [exp] 61 / 4e-11 ND / Lus10002628 [exp] 61 / 9e-11 AT3G03980 358 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019181 [exp] 54 / 1e-09 ND / Lus10032803 [exp] 56 / 4e-09 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G059000 [exp] 68 / 1e-13 AT4G13180 359 / 4e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G033500 [exp] 61 / 6e-11 AT3G03980 321 / 3e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G059100 [exp] 58 / 8e-10 AT3G03980 360 / 1e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G033600 [exp] 54 / 2e-08 AT3G03980 279 / 4e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010673 pacid=23141669 polypeptide=Lus10010673 locus=Lus10010673.g ID=Lus10010673.BGIv1.0 annot-version=v1.0 ATGCTCCTAAAGGTCGATCGTGTGCAAGAAAGACCGACCGTCGAAATCCTTCTTGGCATGAGCATGCTAGTGCACAGTGTACTCCTCCCAAGAGCAGAGG TAGCTCGACTAGATCTACACCTTCGACGAAGGGTACTCCTTCGAACAGTGGCCCGACTCCGGCCTCATCACTTCCAACTAGTATCAAAGTCACATCTCAG ATCCAGTCCAAGTGAAGCAGCTCTTCGACTCGGCAGAGCAATTCTTCGACGCAAAGCCACACATCCTAGTCAACTGCGCCGGGGTAATGGACTAAGTACC CAAGTCTGGCCGACATGGCCGTTGAAGATTGGGACAAGATTTTTATGTCAACGCCTGAGGAGCCTTCCTCTGCTGCAAGGAAGCGGCGAATCGGATCGTC TGAGGCGGAGGAGGGAGGATCGTGATTATAACAACGTCGGTAGTTGGATCGCTCCCACCTGGGTACGCAGCCTACGCGGCATCCAAGGCAGCGGTGGAGG CGATGACGAAGGTTGTGGCGAAGGAGCTGAAGGGGACAGGGATGCGGGCAACTGCGTTGCCCCGAGACCGATGGCGACGGAACTGTTCTTCGTAGGGAAA AGTGAGGAGATAGTGAAGAGGATTGTGGATGCTAATCCTATGCGAAGGCTTGGGGAGGTTGAAGATATAAGTGGTTGGTTTCTTGGTTTCTGA
AA sequence Show only first row Show all	>Lus10010673 pacid=23141669 polypeptide=Lus10010673 locus=Lus10010673.g ID=Lus10010673.BGIv1.0 annot-version=v1.0 MLLKVDRVQERPTVEILLGMSMLVHSVLLPRAEVARLDLHLRRRVLLRTVARLRPHHFQLVSKSHLRSSPSEAALRLGRAILRRKATHPSQLRRGNGLST QVWPTWPLKIGTRFLCQRLRSLPLLQGSGESDRLRRRREDRDYNNVGSWIAPTWVRSLRGIQGSGGGDDEGCGEGAEGDRDAGNCVAPRPMATELFFVGK SEEIVKRIVDANPMRRLGEVEDISGWFLGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13180			NAD(P)-binding Rossmann-fold s...		Lus10010673 [exp]	0	1
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016469 [exp]	1.4	0.9745
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10039348 [exp]	2.0	0.9605
AT4G27290			S-locus lectin protein kinase ...		Lus10014811 [exp]	2.4	0.9678
AT1G01490			Heavy metal transport/detoxifi...		Lus10017520 [exp]	3.2	0.9532
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10034577 [exp]	3.5	0.9531
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021102 [exp]	4.6	0.9650
AT5G10530			Concanavalin A-like lectin pro...		Lus10004279 [exp]	6.0	0.9409
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10019808 [exp]	6.5	0.9395
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	8.4	0.9433
AT4G39230			NmrA-like negative transcripti...		Lus10042312 [exp]	8.8	0.9061

Compare expression of checked genes

Lus10010673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.