Plant FIBer expression Database

Lus10010675 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66030 624 / 0 ATGRIP, GRIP Golgi-localized GRIP domain-containing protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007427
[exp]
1179 / 0 AT5G66030 841 / 0.0 Golgi-localized GRIP domain-containing protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G099800
[exp]
789 / 0 AT5G66030 735 / 0.0 Golgi-localized GRIP domain-containing protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10010675 pacid=23141663 polypeptide=Lus10010675 locus=Lus10010675.g ID=Lus10010675.BGIv1.0 annot-version=v1.0
ATGTCTGCTCCAGAAGTAAATACTGCTGGCAAAACACCTGAGGATCACATGGAAGAGGCTTTCGTAGATCATGATACGCCCTTGTCTGAAGTTCACCATG
GAAGCAATGGGAATCTTGCTAAGGAAAATGGATTGCTTCAAAGTAGCCAACTGACTGACACGACACATGACGAGCTTCTGCAAATGGTTATTGAACTGAA
GTTTCAGAATGACATACTGAAATCTCATTTTGATGGCTTAAGAGATGGCAATGTGGAACATGAAAGGTCTCACCTGAAAATAGAATCAGGTGGTCTGGAA
TCAACAAGCTTGGATAATGTCAAAGAACTCAATGAGCAGATTGAGTCATTGAGTAAGGAACTTAAAGAGGAGAAATTAACCCGCGGTGCAGCTGAGGAGG
CTCTGAAACATCTCCGAGAATCTTATTCAGAGGCTGACCAGAAAGCCCAAGAACTCTCAGCTAAACTCTCTGAAGCCCAGCAGAAGTTGGACCAAGAAAC
AAAAGAACGTGAAGATAAGTACTCTGACCTTGATTCCAAATTTCAAAGGCTTCATAAGAGAGCGAAACAACGGATACAAGAGGTTCAAAAGGAAAAGGAT
GACCTCGAGGTGAAATATCGTGAAGCAAATGAAGCTTTTGAACGGGCATCATCACAGCAGGCCACATTGGAGCAAGAGCTTGAGCGGACTAGGCAACAAG
CAAATGAAGCATTAAAAGCAATGGATGCAGAGAGGCAACAACTAAGAAGTGCAAACAACAAGCTCCGGGATGATATTGAAGAATTGCGCCGATCCATGCA
ACCAAAAGAAAGTGCTTTAGAAACGTTGCAACAGACACTTTCAGATAAAGACCAGATGTTGAAAGAACTGCGGGGGTTGCTACAATCTGCTGAAGAAAAA
CAGCAAGCTTCTATATCTGAGCTTTCTGCCAAACATCAAAAGAGTGTAGAAAATTTGGAAGCGCAGATTGCTGATGCTCTAGCTGATAGGATGAGGGCTA
CAGATAATATATCTTCATTGCAGGTGCTATTAGCAGAGAAGGAATCTAAGATTGCAGAGATGGATGCGGCTTCCAGTGGTGAAACAGCACGGCTTAGAGC
TTCTTTGGAACGCATGAAGGCAGAAATTGCTCACCAAAAACATGAACATGATAAGGAGAAAGAAAGCCTTGAAGCTTATTTACAGGCACTCAAAATGAAA
CTGGAAATATCCGAGAGCAACTGCATACGGGCTGAGATTGAAGCAGCTAAATTAAGAAGCCAATTGGATTCAGAAAAATCTGTTCAGAGCCAGATGCTCA
ACAAAAAAGATGCTGAACTATTGGCAGCCAAACAAGAGATCAACAGCATTGAGACTGAATTTTCGTCGTATAAGGTCCGGGCGCATGCACTTCTCCAGAA
GAAGGATGCTGAGCTTGCTGCAGCTAGTGATACCGAACAGATCCAGGCACTGGAAGACGCACTAAAAGATGCTGAAAGAGAACTATCTTTGGTGTCCACA
GAAAGGGATAAAGCTCTTCAGGATCTACAGAATATGTTAGCTGATCATAGTTCAAAACTCTCTGAAAGAAATGAAGCTCTAAAAGAGGCCCAGCAGGAGA
TCAAGAGCATAGAACGAAAACTAGATTCTGCCATTTCGCATCACAAATCAGAGAAGAAATCGTGGGAGATAAACCTTCAAGAGTTGGAAGAAACATGGAG
ACTGAGGTGCGAGGCATTAAAAGCTGAGGCTGAAGCCTCTTCTGGGCAAGATATTCAAAGACATCTAGAAGAACTCAAACTTCAATATAATAAACTGAAG
GAAGAGCACACTGCATTCCGTGACCTTGCTGATAGAATGATTGAGGTTAAAGACAAGGAAATATCAAAACTTATTGATGACAATAAGAAGCTTCTCCAGT
CTCTAGAGTCTACCTCACCAGCTGATCAGAAGGAAAGCAACCTCACCGGTATCGTCACTTTCTCCCTACTTGTCTAA
AA sequence
>Lus10010675 pacid=23141663 polypeptide=Lus10010675 locus=Lus10010675.g ID=Lus10010675.BGIv1.0 annot-version=v1.0
MSAPEVNTAGKTPEDHMEEAFVDHDTPLSEVHHGSNGNLAKENGLLQSSQLTDTTHDELLQMVIELKFQNDILKSHFDGLRDGNVEHERSHLKIESGGLE
STSLDNVKELNEQIESLSKELKEEKLTRGAAEEALKHLRESYSEADQKAQELSAKLSEAQQKLDQETKEREDKYSDLDSKFQRLHKRAKQRIQEVQKEKD
DLEVKYREANEAFERASSQQATLEQELERTRQQANEALKAMDAERQQLRSANNKLRDDIEELRRSMQPKESALETLQQTLSDKDQMLKELRGLLQSAEEK
QQASISELSAKHQKSVENLEAQIADALADRMRATDNISSLQVLLAEKESKIAEMDAASSGETARLRASLERMKAEIAHQKHEHDKEKESLEAYLQALKMK
LEISESNCIRAEIEAAKLRSQLDSEKSVQSQMLNKKDAELLAAKQEINSIETEFSSYKVRAHALLQKKDAELAAASDTEQIQALEDALKDAERELSLVST
ERDKALQDLQNMLADHSSKLSERNEALKEAQQEIKSIERKLDSAISHHKSEKKSWEINLQELEETWRLRCEALKAEAEASSGQDIQRHLEELKLQYNKLK
EEHTAFRDLADRMIEVKDKEISKLIDDNKKLLQSLESTSPADQKESNLTGIVTFSLLV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G66030 ATGRIP, GRIP Golgi-localized GRIP domain-co... Lus10010675
[exp]
0 1
AT4G09680 ATCTC1 conserved telomere maintenance... Lus10032880
[exp]
1.7 0.8410
AT3G52200 LTA3 Dihydrolipoamide acetyltransfe... Lus10001967
[exp]
2.2 0.8075
AT5G43900 XI-6, XI-2, ATM... MYOSIN XI-6, MYOSIN X1 2, ARAB... Lus10011919
[exp]
3.2 0.8466
AT3G54860 ATVPS33 VACUOLAR PROTEIN SORTING 33, S... Lus10038698
[exp]
4.7 0.7884
AT2G19600 ATKEA4 K+ efflux antiporter 4, K+ eff... Lus10007999
[exp]
8.0 0.8263
AT1G19430 S-adenosyl-L-methionine-depend... Lus10000715
[exp]
8.9 0.7751
AT5G43900 XI-6, XI-2, ATM... MYOSIN XI-6, MYOSIN X1 2, ARAB... Lus10022850
[exp]
9.3 0.8489
AT5G28850 Calcium-binding EF-hand family... Lus10029614
[exp]
12.4 0.8018
AT5G58200 Calcineurin-like metallo-phosp... Lus10016863
[exp]
15.8 0.7043
AT2G19600 ATKEA4 K+ efflux antiporter 4, K+ eff... Lus10040549
[exp]
17.9 0.7636

Lus10010675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.