Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66030 160 / 1e-46 ATGRIP, GRIP Golgi-localized GRIP domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007427 [exp] 256 / 1e-81 AT5G66030 841 / 0.0 Golgi-localized GRIP domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G099800 [exp] 184 / 3e-55 AT5G66030 735 / 0.0 Golgi-localized GRIP domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01465 [flax] [poplar] GRIP GRIP domain
Representative CDS sequence Show only first row Show all	>Lus10010676 pacid=23141683 polypeptide=Lus10010676 locus=Lus10010676.g ID=Lus10010676.BGIv1.0 annot-version=v1.0 ATGGACTCTTACATCCTTCTCGGCTCTCGCTGGCTTTTGGCAAGACAGCAAGCTCAGAGGGAGGAAGAGCTAGGGCAATCGCAGCGGCATATCTTAGCAC TTCAAGAAGAGATTGAAGATCTTGAACGGGAAAATCGTCTCCACAACCAACAGGTCTCCATGTTGAAATCCGAGCTCCGAAGCATGGAAAGGACACAGAA GAGAGAGGGGGTTGACATGACATATCTAAAAAACATCATTGTAAAACTTCTTGAAACAGGTGAGGTGGAAGCGTTGCTCCCTGTTGTTGCTATGCTTCTA CAATTCAGTCCCGAGGAGGTGCAGAAATGTCGACAAGCATTCCGCACATTGCAGGATGTTCCACCGCAAAATCCTGCTAATGATGCGCCAGGATCTGCTC TCAACATCCTCTCCAGATTCTCGTTTTCCTGA
AA sequence Show only first row Show all	>Lus10010676 pacid=23141683 polypeptide=Lus10010676 locus=Lus10010676.g ID=Lus10010676.BGIv1.0 annot-version=v1.0 MDSYILLGSRWLLARQQAQREEELGQSQRHILALQEEIEDLERENRLHNQQVSMLKSELRSMERTQKREGVDMTYLKNIIVKLLETGEVEALLPVVAMLL QFSPEEVQKCRQAFRTLQDVPPQNPANDAPGSALNILSRFSFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10010676 [exp]	0	1
AT4G30900			DNAse I-like superfamily prote...		Lus10022154 [exp]	1.0	0.8866
AT5G02930			F-box/RNI-like superfamily pro...		Lus10029589 [exp]	4.9	0.8236
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013076 [exp]	5.7	0.8029
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042935 [exp]	5.7	0.7950
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10022815 [exp]	6.2	0.8213
AT5G10190			Major facilitator superfamily ...		Lus10027265 [exp]	9.2	0.7654
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10025388 [exp]	12.9	0.6770
AT4G14965		ATMAPR4	membrane-associated progestero...		Lus10018026 [exp]	13.6	0.7994
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042936 [exp]	13.7	0.7906
					Lus10042808 [exp]	14.4	0.7660

Compare expression of checked genes

Lus10010676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.