Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32750 491 / 1e-170 Exostosin family protein (.1) AT4G13990 463 / 2e-159 Exostosin family protein (.1) AT2G29040 466 / 7e-158 Exostosin family protein (.1) AT2G20370 452 / 1e-153 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT2G32740 426 / 7e-146 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT2G31990 398 / 1e-134 Exostosin family protein (.1) AT5G62220 317 / 1e-102 ATGT18 glycosyltransferase 18 (.1) AT1G68470 313 / 6e-102 Exostosin family protein (.1) AT5G41250 315 / 4e-101 Exostosin family protein (.1) AT1G63450 316 / 2e-100 RHS8 root hair specific 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007426 [exp] 967 / 0 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10001028 [exp] 626 / 0 AT4G13990 499 / 1e-173 Exostosin family protein (.1) Lus10001578 [exp] 480 / 5e-165 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10004967 [exp] 479 / 2e-164 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10006694 [exp] 474 / 3e-163 AT4G13990 617 / 0.0 Exostosin family protein (.1) Lus10016532 [exp] 464 / 8e-160 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10024961 [exp] 457 / 7e-156 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10022862 [exp] 453 / 4e-154 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10007037 [exp] 424 / 4e-145 AT4G13990 540 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G147800 [exp] 521 / 0 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 484 / 2e-167 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.009G032500 [exp] 475 / 3e-162 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 455 / 2e-155 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.001G382200 [exp] 320 / 4e-104 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.001G105300 [exp] 322 / 8e-104 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.001G381900 [exp] 318 / 2e-103 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.012G130700 [exp] 302 / 6e-97 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.015G132600 [exp] 290 / 3e-92 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.001G120800 [exp] 279 / 1e-88 AT4G22580 593 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10010677 pacid=23141695 polypeptide=Lus10010677 locus=Lus10010677.g ID=Lus10010677.BGIv1.0 annot-version=v1.0 ATGGAGCAGAAGAGCAGCAAGCACACGGTAGCATGTACTCAACTCTGGTTTTCCATTCTCATCGCCTTCTCTTTGCTATTCATCTCTCGACCCACTGTCG ATTACACATCACCATTCATCGGAGAAAGAAGAGAGAAACTTGCTGTTCTATTCACCACTTTATTCAACAGCCATTCTGATGAAGAACCAATTACAACAGC TACTACTACGGCTGCTGCGAATAATACTTGCACGGGCCGTTACATCTACGTTCATGAGCTTCCGGACCGTTTCAACAACGAAATCATCCAGAACTGTCGC TATAATTCGCTCCTCAAATGGCGCAACATGTGCCCATCTCTGTCGAATTTCGGACTCGGTACTCAAGTTCAGGATCCTGGTAAGGTTCTGATGGGGAAAA GCTGGTATGTGACTGATCAGTTCACCCTTGAAGTAATTTTCCATCAACGGATAAAGCAATACGACTGTTTAACGAATGATTCCTCGTTAGCCTCCGCTAT ATTCGTTCCGTATTATGCTGGTTTTGATGTTGGAAGGCATCTCTGGGGTGATTATAATACAACTGTCAGGGATGCGTTAGGTATTGAGCTTGTGAAATGG CTCAGAAACCAACCTGAATGGAATAAGGGACCTAAAGGATTGTTTGGTAAAGACCATTTCTTTGTTTCGGGACGGATTGCTTGGGACCTTCACAGATCAT CAAACGACGACGACACGCATTGGGGAAGCAATCTGATGCAACTCCCTGAATCGAAGAACATGACAATGCTTTCGATCGAAACAACTTCATCAAACAACGA GTTCGCGATTCCATATCCGACATATTTCCATCCCAGGGGAGCAAAACAGGTGCATCAATGGCAAAAGAGAATCAGAAGACAGAAAAGGCCGTACCTTTTC TCGTTCGTGGGGGCCCCACGAGCTAATACCGCGGATTCCATCCGCGGAGAGCTCATGAAGCAGTGCCGGGATTTGGGCAAGAAATCATGCAAGCTTCTCA ACTGTCAGTCTACGAAATGTGAGAGTCCGGTCGAGGTGATGAAAGTGCTTCAGAGATCGATCTTCTGTTTGCAGCCGAGTGGCGACTCTTACACGAGGAG ATCCATTTTCGACTCGATATTGGCCGGGTGCATCCCTGTGTTCTTCCATCCTTTCTCAGCTTACGGGCAGTACACGTGGCATTTTCCGAGGAATTATTCT TCATACTCTGTTTACATACCGGAGAAGCGTGTGAAACAAGGCAAAGTCAGCGTCAGGAAAAGGCTGCTTGGGATTTCGAAGCAAGAGGTTGCGGCCATGA GACAGGTGGTGGTGGAGTTGATTCCGAAGGTGATATATAGGAATCCCGCGTCGAAATCGAAGGACTTTGAAGATGCGTTTGACATTGCGGTAAATCGAGT GCTGGAAAGAGTAGCCGAAATTAGAAGAAGAGACAGTGAGGAAGGGGAAGAAGATGCAGGTAGCTGGAAGTTGAAAATGGATGGGATAGGGAAAGATCAC GAGTGGGATGAATTCTTCTGA
AA sequence Show only first row Show all	>Lus10010677 pacid=23141695 polypeptide=Lus10010677 locus=Lus10010677.g ID=Lus10010677.BGIv1.0 annot-version=v1.0 MEQKSSKHTVACTQLWFSILIAFSLLFISRPTVDYTSPFIGERREKLAVLFTTLFNSHSDEEPITTATTTAAANNTCTGRYIYVHELPDRFNNEIIQNCR YNSLLKWRNMCPSLSNFGLGTQVQDPGKVLMGKSWYVTDQFTLEVIFHQRIKQYDCLTNDSSLASAIFVPYYAGFDVGRHLWGDYNTTVRDALGIELVKW LRNQPEWNKGPKGLFGKDHFFVSGRIAWDLHRSSNDDDTHWGSNLMQLPESKNMTMLSIETTSSNNEFAIPYPTYFHPRGAKQVHQWQKRIRRQKRPYLF SFVGAPRANTADSIRGELMKQCRDLGKKSCKLLNCQSTKCESPVEVMKVLQRSIFCLQPSGDSYTRRSIFDSILAGCIPVFFHPFSAYGQYTWHFPRNYS SYSVYIPEKRVKQGKVSVRKRLLGISKQEVAAMRQVVVELIPKVIYRNPASKSKDFEDAFDIAVNRVLERVAEIRRRDSEEGEEDAGSWKLKMDGIGKDH EWDEFF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32750			Exostosin family protein (.1)		Lus10010677 [exp]	0	1
AT5G41761			unknown protein		Lus10000541 [exp]	1.4	0.8625
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10035560 [exp]	8.4	0.8306
					Lus10001992 [exp]	10.6	0.7241
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10040657 [exp]	17.5	0.7614
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10043039 [exp]	25.1	0.7381
AT3G26740		CCL	CCR-like (.1)		Lus10012569 [exp]	28.0	0.7371
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10011443 [exp]	29.4	0.7320
AT4G32290			Core-2/I-branching beta-1,6-N-...		Lus10001503 [exp]	32.0	0.7299
AT1G08350			Endomembrane protein 70 protei...		Lus10020613 [exp]	32.6	0.7562
AT5G20885			RING/U-box superfamily protein...		Lus10008235 [exp]	33.9	0.7557

Compare expression of checked genes

Lus10010677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.