Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23840 290 / 1e-98 HNH endonuclease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007425 [exp] 420 / 5e-150 AT2G23840 249 / 1e-82 HNH endonuclease (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G059500 [exp] 348 / 1e-121 AT2G23840 340 / 4e-118 HNH endonuclease (.1) Potri.019G033200 [exp] 327 / 5e-113 AT2G23840 332 / 3e-115 HNH endonuclease (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0263 [flax] [poplar] His-Me_finger PF01844 [flax] [poplar] HNH HNH endonuclease
Representative CDS sequence Show only first row Show all	>Lus10010678 pacid=23141666 polypeptide=Lus10010678 locus=Lus10010678.g ID=Lus10010678.BGIv1.0 annot-version=v1.0 ATGGCTCAATTTACTACACAAGGCCGCCTCAAGTTTCTGTTTAACACTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGCTCACTATAAACATTTAGGCA GCGATTCTGTCGGATCATTTGAGCTCCACAAAGCCAGACTTAGGTTCTTATGCTCTTCCTCCACCAGGCTACATGCGAAGCCCAGCAAGTTCTATGCAGA AGCCAGGCGCAGCAGTGATGGCAGCAGTAATCGCGACAGTGAGAATGGCACAAATCATGACGAAGATTACGAAATTGAATTTGAGACTGATGAATTGGCT TGCTTCAGAGGCTTGGTCTTGGATATAGCTTACAGGCCAGTCAATGTTGTCTGCTGGAAGCGTGCTATATGTTTGGAATTCATGGAGAAGGCTGATGTGT TAGAATACTATGATCAGACAGTCAACTCTCCTAGTGGTTCCTACTACATCCCTGCCGTGCTAAGGGTTCGACAGCTACTTCAGGTTGTTAAGACGAGAAG AATAAAAAACAGCCTTAGTCGCAAAAATATATTGCATCGCGATGGCTATTTCTGCCAGTACTGCTATTCAAGTGAGAATTTGACCATCGATCATGTTTTC CCTGCTTCCCGGGGAGGAGAGTGGAAATGGGAGAATCTGGTGACAGCTTGTTCAAAGTGCAATTCAAAGAAGGGACAGAAGACTCTGGAGGAAGCAAATA TGAAGCTCATTAAAGTGCCCAAGGCCCCCAAGGAGTACGAAATACTTGCAATACCATTAACAAGTGCAGCACTGATGATGCTAAGTAGTAAAAAAGGGAC ACCTGAAGAGTGGCGACAATATCTCCCACCACAGCCATGA
AA sequence Show only first row Show all	>Lus10010678 pacid=23141666 polypeptide=Lus10010678 locus=Lus10010678.g ID=Lus10010678.BGIv1.0 annot-version=v1.0 MAQFTTQGRLKFLFNTGGGGGGGGGGAHYKHLGSDSVGSFELHKARLRFLCSSSTRLHAKPSKFYAEARRSSDGSSNRDSENGTNHDEDYEIEFETDELA CFRGLVLDIAYRPVNVVCWKRAICLEFMEKADVLEYYDQTVNSPSGSYYIPAVLRVRQLLQVVKTRRIKNSLSRKNILHRDGYFCQYCYSSENLTIDHVF PASRGGEWKWENLVTACSKCNSKKGQKTLEEANMKLIKVPKAPKEYEILAIPLTSAALMMLSSKKGTPEEWRQYLPPQP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23840			HNH endonuclease (.1)		Lus10010678 [exp]	0	1
AT2G23840			HNH endonuclease (.1)		Lus10007425 [exp]	1.4	0.9234
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Lus10036121 [exp]	9.3	0.8777
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10006710 [exp]	10.3	0.9173
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019475 [exp]	11.0	0.9041
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015288 [exp]	11.2	0.9165
AT2G05620		PGR5	proton gradient regulation 5 (...		Lus10023734 [exp]	12.5	0.8971
AT1G74640			alpha/beta-Hydrolases superfam...		Lus10024219 [exp]	14.1	0.8998
AT5G05200			Protein kinase superfamily pro...		Lus10012864 [exp]	17.0	0.8931
AT5G03880			Thioredoxin family protein (.1...		Lus10021357 [exp]	17.5	0.8964
AT2G42975			unknown protein		Lus10007332 [exp]	18.0	0.8825

Compare expression of checked genes

Lus10010678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.