Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35640 448 / 6e-159 ATSERAT3;2 serine acetyltransferase 3;2 (.1) AT2G17640 425 / 3e-150 SAT-106, AtSerat3;1 SERINE ACETYLTRANSFERASE 106, Trimeric LpxA-like enzymes superfamily protein (.1) AT5G56760 283 / 2e-94 SAT-52, AtSerat1;1, SAT5 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) AT1G55920 282 / 4e-94 SAT5, SAT1, AtSerat2;1 SERINE ACETYLTRANSFERASE 5, SERINE ACETYLTRANSFERASE 1, serine acetyltransferase 2;1 (.1) AT3G13110 282 / 6e-93 SAT-M, SAT-A, SAT3, SAT-1, AtSerat2;2 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) AT5G66510 42 / 0.0003 CA3, GAMMACA3 ,GAMMA CA3 gamma carbonic anhydrase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007424 [exp] 464 / 4e-165 AT4G35640 294 / 4e-98 serine acetyltransferase 3;2 (.1) Lus10016603 [exp] 286 / 3e-95 AT3G13110 430 / 2e-151 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) Lus10008567 [exp] 281 / 9e-94 AT5G56760 482 / 2e-173 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Lus10032686 [exp] 280 / 2e-93 AT5G56760 481 / 2e-173 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Lus10040503 [exp] 275 / 4e-91 AT3G13110 434 / 4e-153 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G099700 [exp] 287 / 3e-97 AT4G35640 280 / 2e-94 serine acetyltransferase 3;2 (.1) Potri.013G109500 [exp] 289 / 6e-97 AT5G56760 419 / 1e-148 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Potri.001G365500 [exp] 285 / 5e-95 AT3G13110 402 / 3e-140 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) Potri.015G147000 [exp] 276 / 3e-92 AT5G56760 420 / 5e-149 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Potri.011G068001 [exp] 140 / 6e-41 AT2G17640 134 / 6e-39 SERINE ACETYLTRANSFERASE 106, Trimeric LpxA-like enzymes superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06426 [flax] [poplar] SATase_N Serine acetyltransferase, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10010679 pacid=23141670 polypeptide=Lus10010679 locus=Lus10010679.g ID=Lus10010679.BGIv1.0 annot-version=v1.0 ATGGCCCAACACTCCACACTCTGCCTTTCCATGACCGGTAAACAACAACAGCAGCATAACAAGAGCTCCTATCCTTTCGAGAAGATTTTCCCAGTTTACG CCATGGGCGTCTCCAGGCCAGACTCTGACTCTATTCTTAACTCACTTGACCACGACCACATTTGGGAGGCTGTCCAGGACGAGGCCAAGTCTGAGGCGGA GAAAGAACCAATTCTAAGCAGCTTTCTGTACGCCAGCATACTCTCACACGACTGCTTGGAGCAAGCACTTTCCTTTGTTCTCTCCAATCGACTTCACAAT CCTACCCTTTTGGCCACTCAATTGTTAGATACGTTCCTTGATGTTATAATGCACGACATTGACATTCGTCGCGCAATTCGCCTCGATGTTCAGGCATTTA AGGATCGGGATCCTGCTTGTCTTTCATATTGTACAGCTCTCTTGTATCTCAAGGGTTACCACTCCCTGCAAAGCTATAGAGTAGCTCACGTGTTATGGAA GAGAGGACAGAAAGTGTTGGCTCTCGCATTACAGAGTCGGATCAGCGAGGTGTTCGGAGTTGACATTCATCCGGCCGCAAAGATTGGAGAAGGAATATTG CTGGATCATGGAACAGGTGTGGTAATTGGAGAAACCGCTGTTATTGGTAACCGAGTATCCTTGATGCATGGTGTTACTCTAGGAGGAAGCGGGAAAGAAA ATGGAGATCGTCATCCGAAAGTAGGGGATGGAGCACTGATTGGAGCATGTGTGACGGTACTTGGGAACATCAAAATTGGTGAAGGGGCTATGATAGCTTC TGGATCTCTTGTATTGAAGGATGTCCCCCCACACAGCATGATGGCAGGAACACCAGCTAAAGTTATTGGATATGTTGATGAGAAAGATCCATCTCTAACT ATGAATCACGATGCTACCAAAGATTTCTTCGAGTACGTAGCAGTCAGCAGCTATACTGAAGGAAAATTGAACAGTAAGTTTTGCTGTTCTGATATGTGA
AA sequence Show only first row Show all	>Lus10010679 pacid=23141670 polypeptide=Lus10010679 locus=Lus10010679.g ID=Lus10010679.BGIv1.0 annot-version=v1.0 MAQHSTLCLSMTGKQQQQHNKSSYPFEKIFPVYAMGVSRPDSDSILNSLDHDHIWEAVQDEAKSEAEKEPILSSFLYASILSHDCLEQALSFVLSNRLHN PTLLATQLLDTFLDVIMHDIDIRRAIRLDVQAFKDRDPACLSYCTALLYLKGYHSLQSYRVAHVLWKRGQKVLALALQSRISEVFGVDIHPAAKIGEGIL LDHGTGVVIGETAVIGNRVSLMHGVTLGGSGKENGDRHPKVGDGALIGACVTVLGNIKIGEGAMIASGSLVLKDVPPHSMMAGTPAKVIGYVDEKDPSLT MNHDATKDFFEYVAVSSYTEGKLNSKFCCSDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35640		ATSERAT3;2	serine acetyltransferase 3;2 (...		Lus10010679 [exp]	0	1
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10029928 [exp]	8.5	0.6764
AT5G47435			formyltetrahydrofolate deformy...		Lus10028958 [exp]	9.7	0.7732
AT4G01995			unknown protein		Lus10012004 [exp]	10.9	0.7552
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	26.4	0.7514
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10033745 [exp]	30.2	0.7322
AT3G16190			Isochorismatase family protein...		Lus10037581 [exp]	37.0	0.7272
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10041898 [exp]	38.6	0.7251
AT3G62080			SNF7 family protein (.1.2)		Lus10009262 [exp]	42.6	0.6926
AT5G60540		EMB2407, ATPDX2...	EMBRYO DEFECTIVE 2407, pyridox...		Lus10034326 [exp]	55.6	0.6209
AT3G52050			5'-3' exonuclease family prote...		Lus10035938 [exp]	57.0	0.6830

Compare expression of checked genes

Lus10010679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.