Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38640 183 / 9e-59 Protein of unknown function (DUF567) (.1) AT5G41590 134 / 3e-39 Protein of unknown function (DUF567) (.1) AT3G15810 114 / 2e-31 Protein of unknown function (DUF567) (.1) AT1G80120 100 / 4e-26 Protein of unknown function (DUF567) (.1) AT1G53870 81 / 2e-18 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G53890 81 / 2e-18 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2), Protein of unknown function (DUF567) (.3) AT3G14260 81 / 2e-18 Protein of unknown function (DUF567) (.1) AT1G53880 80 / 3e-17 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53900 80 / 3e-17 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT3G11740 67 / 2e-13 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007423 [exp] 405 / 5e-146 AT2G38640 187 / 4e-60 Protein of unknown function (DUF567) (.1) Lus10017526 [exp] 147 / 1e-43 AT5G41590 194 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10028756 [exp] 145 / 4e-43 AT5G41590 194 / 7e-62 Protein of unknown function (DUF567) (.1) Lus10016666 [exp] 95 / 1e-23 AT3G15810 265 / 5e-90 Protein of unknown function (DUF567) (.1) Lus10032602 [exp] 87 / 1e-20 AT3G15810 211 / 5e-69 Protein of unknown function (DUF567) (.1) Lus10038097 [exp] 86 / 3e-20 AT3G15810 216 / 8e-71 Protein of unknown function (DUF567) (.1) Lus10008485 [exp] 69 / 3e-14 AT3G14260 132 / 4e-38 Protein of unknown function (DUF567) (.1) Lus10014021 [exp] 66 / 4e-13 AT5G01750 202 / 6e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10002477 [exp] 65 / 1e-12 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G143000 [exp] 226 / 3e-75 AT2G38640 214 / 1e-70 Protein of unknown function (DUF567) (.1) Potri.006G113400 [exp] 226 / 5e-75 AT2G38640 214 / 5e-71 Protein of unknown function (DUF567) (.1) Potri.001G098400 [exp] 157 / 7e-48 AT5G41590 201 / 3e-65 Protein of unknown function (DUF567) (.1) Potri.003G133200 [exp] 149 / 8e-45 AT5G41590 207 / 1e-67 Protein of unknown function (DUF567) (.1) Potri.003G032500 [exp] 122 / 1e-34 AT3G15810 264 / 2e-90 Protein of unknown function (DUF567) (.1) Potri.001G192000 [exp] 121 / 3e-34 AT3G15810 281 / 5e-97 Protein of unknown function (DUF567) (.1) Potri.006G113800 [exp] 95 / 6e-24 AT1G80120 112 / 3e-30 Protein of unknown function (DUF567) (.1) Potri.006G067000 [exp] 90 / 3e-22 AT3G15810 229 / 1e-76 Protein of unknown function (DUF567) (.1) Potri.016G143500 [exp] 90 / 7e-22 AT1G80120 105 / 7e-28 Protein of unknown function (DUF567) (.1) Potri.003G072200 [exp] 82 / 4e-19 AT3G14260 173 / 2e-54 Protein of unknown function (DUF567) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10010681 pacid=23141679 polypeptide=Lus10010681 locus=Lus10010681.g ID=Lus10010681.BGIv1.0 annot-version=v1.0 ATGACGAAGGTGTACCCAAACTTGGCTTCTACTTGTAGGAGCAATGGCCGCGATGACTACGACGATCCACGTAAGCAGCCCCCCGCCGGAGAGGCTAACG ACGCCGTTCAGCTAATCGTATGGAAAAAATCACTACTCTTCAACTGCAACGGCTTCACAGTGTTTGACGCCAAAGGGAACTTAGTTTTCAGAGTCGACAA CTACATGGCAGCTGCTTCCGGCGAGATCCTGCTCATGGACGCCGCCGGGAACGCTCTGCTTACAATCCGCCGCAAAAAGAAGATGGGTCTGGGAGGAGAT AGCTGGACGGTGTACGACGGCGAAACAACGGCGAACCCCATGTTTTGTGTACGGAAGAAGGTGATGAGTCCGAGATGTTTGGCGCAGGTGTTAAGTGGTG GTGGTAGTGGGAGCTTGCGGTATGAGATAGAGGGTTCGTTTGCTCAGAGGAGCTGTGTGGTTTATGACAAGAGACGGAGGAGCGTGGTTGAGATTTTACA GAAGGAGGCGGCTGTCGGAGGGGTGGCGTTTGGGTTTGATGTGTTTCGTATGGTGGTTCGTAGTGGGTTGATTAAGACGTCGTTGGCGATGGCGCTTGTT ATACTTCTTGACCAGATGTATGCTTCTCCCACGCGCTGA
AA sequence Show only first row Show all	>Lus10010681 pacid=23141679 polypeptide=Lus10010681 locus=Lus10010681.g ID=Lus10010681.BGIv1.0 annot-version=v1.0 MTKVYPNLASTCRSNGRDDYDDPRKQPPAGEANDAVQLIVWKKSLLFNCNGFTVFDAKGNLVFRVDNYMAAASGEILLMDAAGNALLTIRRKKKMGLGGD SWTVYDGETTANPMFCVRKKVMSPRCLAQVLSGGGSGSLRYEIEGSFAQRSCVVYDKRRRSVVEILQKEAAVGGVAFGFDVFRMVVRSGLIKTSLAMALV ILLDQMYASPTR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38640			Protein of unknown function (D...		Lus10010681 [exp]	0	1
AT3G25160			ER lumen protein retaining rec...		Lus10022763 [exp]	2.2	0.9248
AT1G01490			Heavy metal transport/detoxifi...		Lus10028762 [exp]	4.5	0.9252
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	6.1	0.9303
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	11.0	0.9256
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	11.7	0.9273
AT5G18270	NAC	ANAC087	Arabidopsis NAC domain contain...		Lus10026879 [exp]	15.1	0.9133
AT3G11810			unknown protein		Lus10037134 [exp]	16.6	0.9071
AT4G18360			Aldolase-type TIM barrel famil...		Lus10038507 [exp]	19.1	0.9200
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015966 [exp]	19.9	0.9092
AT5G53110			RING/U-box superfamily protein...		Lus10023086 [exp]	22.0	0.9150

Compare expression of checked genes

Lus10010681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.