Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10840 264 / 7e-85 Endomembrane protein 70 protein family (.1) AT5G25100 263 / 3e-84 Endomembrane protein 70 protein family (.1.2) AT3G13772 248 / 1e-78 AtTMN7 transmembrane nine 7 (.1) AT2G24170 247 / 3e-78 Endomembrane protein 70 protein family (.1) AT1G55130 239 / 1e-75 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT5G35160 140 / 1e-38 Endomembrane protein 70 protein family (.1.2) AT4G12650 124 / 1e-32 Endomembrane protein 70 protein family (.1) AT2G01970 103 / 1e-25 Endomembrane protein 70 protein family (.1) AT5G37310 103 / 3e-25 Endomembrane protein 70 protein family (.1) AT1G14670 100 / 2e-24 Endomembrane protein 70 protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026254 [exp] 275 / 4e-89 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10042415 [exp] 275 / 4e-89 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10015624 [exp] 255 / 2e-81 AT3G13772 1133 / 0.0 transmembrane nine 7 (.1) Lus10037643 [exp] 254 / 5e-81 AT3G13772 1134 / 0.0 transmembrane nine 7 (.1) Lus10000222 [exp] 251 / 6e-80 AT5G10840 1071 / 0.0 Endomembrane protein 70 protein family (.1) Lus10016072 [exp] 145 / 6e-40 AT4G12650 1123 / 0.0 Endomembrane protein 70 protein family (.1) Lus10019073 [exp] 140 / 2e-38 AT5G35160 749 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10027831 [exp] 138 / 1e-37 AT5G35160 1104 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10005060 [exp] 137 / 3e-37 AT5G35160 1100 / 0.0 Endomembrane protein 70 protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G264500 [exp] 272 / 9e-88 AT5G10840 1059 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G018400 [exp] 270 / 3e-87 AT5G10840 1070 / 0.0 Endomembrane protein 70 protein family (.1) Potri.006G184200 [exp] 260 / 2e-83 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G106600 [exp] 257 / 5e-82 AT2G24170 971 / 0.0 Endomembrane protein 70 protein family (.1) Potri.003G038700 [exp] 256 / 5e-82 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.006G189300 [exp] 141 / 9e-39 AT5G35160 1122 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.002G217300 [exp] 141 / 1e-38 AT4G12650 1122 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G113500 [exp] 139 / 4e-38 AT5G35160 1127 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.014G172200 [exp] 139 / 6e-38 AT4G12650 1115 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G218300 [exp] 105 / 7e-26 AT1G10950 920 / 0.0 transmembrane nine 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [flax] [poplar] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Lus10010683 pacid=23141664 polypeptide=Lus10010683 locus=Lus10010683.g ID=Lus10010683.BGIv1.0 annot-version=v1.0 ATGTTCCCAGGAATCATCTCTGCCATTTTCTTTGTGTTGAATGCACTTATATGGGGCCAGAAGTCATCAGGAGCTGTTCCATTCGGCACAATGTTCGCCT TGGTATTCTTATGGTTTCGAATCTCCGTTCCACTTGTTTTCGTTGGAAGTTATATCGGATTCAGGAAGACAGCTCTTGAGGATCCAGTAAAGACCAATAA AATTCCAATACAGATCCCGGAGCAAGCATGGTACATGAACCCAGCATTTTCAGTCTTGATCGGAGGGATACTTCCATTTGGAGGCGTGTTCATTGAGCTG TTCTTCATCCTGACCTCAATCTGGCTGAATCAGTTCTACTACATCTTTGGGTTCTTGTTCTTGGTGTTCATCATCCTCATCATCACATGCGCAGAGATCA CAGTTGTACGGTGCTACTTCCAGTTGTGCAGCGAGGACTACCTGTGGTGGTGGAGATCGTACCTGACCTCTGGCTCCTCTGCACTTTACCTGTTTCTCTA CGCAACATTTTACTTACTTCACCAAGCTAGAAATCACAAAGTTTGTATCCGGAGTGCTGTACTTCGGCTACATGCTGATTGCCTCGTACGCATTCTTTGT CCTGACCGGCACAATCGGGTTCTATGCGTGCTTCTGGTTCACGAGGCTCATCTACTCGTCTGTGAAGATTGA
AA sequence Show only first row Show all	>Lus10010683 pacid=23141664 polypeptide=Lus10010683 locus=Lus10010683.g ID=Lus10010683.BGIv1.0 annot-version=v1.0 MFPGIISAIFFVLNALIWGQKSSGAVPFGTMFALVFLWFRISVPLVFVGSYIGFRKTALEDPVKTNKIPIQIPEQAWYMNPAFSVLIGGILPFGGVFIEL FFILTSIWLNQFYYIFGFLFLVFIILIITCAEITVVRCYFQLCSEDYLWWWRSYLTSGSSALYLFLYATFYLLHQARNHKVCIRSAVLRLHADCLVRILC PDRHNRVLCVLLVHEAHLLVCED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10840			Endomembrane protein 70 protei...		Lus10010683 [exp]	0	1
AT4G10265			Wound-responsive family protei...		Lus10039760 [exp]	9.8	0.6602
AT4G35890			winged-helix DNA-binding trans...		Lus10025952 [exp]	11.0	0.6301
AT1G05020			ENTH/ANTH/VHS superfamily prot...		Lus10035340 [exp]	11.6	0.6933
					Lus10038177 [exp]	13.2	0.6453
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10031172 [exp]	15.0	0.6720
AT2G28680			RmlC-like cupins superfamily p...		Lus10040867 [exp]	17.3	0.6213
AT4G15733		SCRL11	SCR-like 11 (.1)		Lus10029762 [exp]	20.3	0.6838
AT2G35615			Eukaryotic aspartyl protease f...		Lus10035668 [exp]	28.0	0.6061
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002242 [exp]	30.0	0.5434
AT1G44100		AAP5	amino acid permease 5 (.1)		Lus10042742 [exp]	30.1	0.6196

Compare expression of checked genes

Lus10010683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.