Plant FIBer expression Database

Lus10010684 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G018700
[exp]
797 / 0 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence
>Lus10010684 pacid=23141682 polypeptide=Lus10010684 locus=Lus10010684.g ID=Lus10010684.BGIv1.0 annot-version=v1.0
ATGAAACTGCGGCCAATCTCAGTACTCGCTTTCCTTCTCCTATCCACAGCAGCAGCGGCGGTGGCGGATTCCTCACCACCACAGTGCAAAGCATGGCTCG
TCCAATCCATTCCCACGGACATGCCCGACCTTCCTCGTGTCTCTGGCGTTCTCTCTTCCGGCGACGTTCTCCGGTGGCTTGCTGGGAACTCTACCAAGAG
ACTTGATGTCATCGCGCAGTACTGGCAGCTCGTCGCCTCGCCGGAAGATCCTCAGTCCGGTGACTATGGATACTCCGAGTCGGATATGGCAAGATTAGGA
GTTGGTGAAGGAGCTGCTGTTTACAATGCCATAGAGGAGGCTTCTGATCGTAATGTCAGTATTAGGTTGCTGCAACACTCTGGTGTATATCCTACTTTCA
CTAAAGAACCGGATGAACTTGCTTCAAGAAGGCCAGAAAATGTGAAGAGTGCCACTTTGCTGTTTGACGATTGGTGGGGTTCTGGTATTGTTCATGCTAA
GGTCTGGATATCTGATCGTAGGGATGTTTACATTGGATCCGCCAACAATGATTGGAAATCCCTAACTCAGGTTAAAGAATTGGGGATTTATCTTGTCAAT
TGTCCAACTATAGTTAAAGCTGTTGAGGTCTACTTTGATAACTTGTGGAAACTGGCGTTTTTAAATTCATCAGCTCATACAAGAACGGCGTGGGATCAAG
AATGGCAGGTCAATAGAACAGTTCCATGCTGGTCACATTTCATTGCTCGTAGAGCAAGATGCAAGTCACCTATCCCTCGTTATGTGGAGGTTCCCCATGT
TACTGGCTATCCTATATTATCAGACCCATATATGTTTAGACTGCCGATTCAGGCTCCTGGACTGAACTATTCAACTCTGAAGCCTCAACTTAACTATCTA
TCGTTTGCTCCTCCTGAGCTACTATTCGGAAGGCATCAGAGTGATGAGCAAGCGTGGATTGACACCATAAAATCCGTTGGAAGTGGAATGACAATAAGGA
TAAATACCATGGATTGGCTGGGTCAGAGCCAATATACAAAAGACATGGTTTACTGGTCCTCTCTCTCATCTGCAATATCAGAGGTTATGTTCTCAAAGCA
TGCAACAGTGAAGATACTGGTTGCATACTGGGCACACAACATCAACAACACAGACCAGTACCTGAAGTCTGTCCTCTACTCGAATGCACTATGTTCTTCT
TCCAAGTTCAACAAATGCAGCGGTAAAGTGGAGATCAGGTACTATATGGTTCCAGGTTACAACGTGACGGGGCCTGCTCTGAGCAACGGATCGAGGACAA
GAAATGTATATCCTGGTTTTACTAGAGTGAACCATGGGAAATATGCAGTTAGTGATACCAGAGCTCATATAAGCACAAGCAATCTTGTATGGGATTATTT
CTATACTACTGCTGGTGTCAGCTATGGGACGTATCACCCTGCCATTGTTTCACAGCTCCAGGCTGTTTTTGATGCCGACTGGGATTCGCCATACACGGTT
CCAGTTAAGGAGCTGGTTGAGGAGGGTCGTTCATATTCTAGCTGA
AA sequence
>Lus10010684 pacid=23141682 polypeptide=Lus10010684 locus=Lus10010684.g ID=Lus10010684.BGIv1.0 annot-version=v1.0
MKLRPISVLAFLLLSTAAAAVADSSPPQCKAWLVQSIPTDMPDLPRVSGVLSSGDVLRWLAGNSTKRLDVIAQYWQLVASPEDPQSGDYGYSESDMARLG
VGEGAAVYNAIEEASDRNVSIRLLQHSGVYPTFTKEPDELASRRPENVKSATLLFDDWWGSGIVHAKVWISDRRDVYIGSANNDWKSLTQVKELGIYLVN
CPTIVKAVEVYFDNLWKLAFLNSSAHTRTAWDQEWQVNRTVPCWSHFIARRARCKSPIPRYVEVPHVTGYPILSDPYMFRLPIQAPGLNYSTLKPQLNYL
SFAPPELLFGRHQSDEQAWIDTIKSVGSGMTIRINTMDWLGQSQYTKDMVYWSSLSSAISEVMFSKHATVKILVAYWAHNINNTDQYLKSVLYSNALCSS
SKFNKCSGKVEIRYYMVPGYNVTGPALSNGSRTRNVYPGFTRVNHGKYAVSDTRAHISTSNLVWDYFYTTAGVSYGTYHPAIVSQLQAVFDADWDSPYTV
PVKELVEEGRSYSS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10010684
[exp]
0 1
AT5G05320 FAD/NAD(P)-binding oxidoreduct... Lus10025068
[exp]
4.5 0.9281
AT3G55230 Disease resistance-responsive ... Lus10003301
[exp]
6.6 0.9234
AT2G34930 disease resistance family prot... Lus10006948
[exp]
7.1 0.9124
AT4G06536 SPla/RYanodine receptor (SPRY)... Lus10010045
[exp]
8.1 0.9213
AT3G14470 NB-ARC domain-containing disea... Lus10042117
[exp]
10.0 0.9192
AT3G06890 unknown protein Lus10037501
[exp]
12.5 0.8709
AT3G14470 NB-ARC domain-containing disea... Lus10022792
[exp]
13.6 0.9120
AT5G63220 unknown protein Lus10036505
[exp]
14.0 0.8849
AT1G26870 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain co... Lus10036749
[exp]
14.7 0.9104
AT4G33360 FLDH farnesol dehydrogenase, NAD(P)... Lus10041863
[exp]
15.8 0.9058

Lus10010684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.