Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12770 617 / 0 ISE1, EMB1586 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60990 162 / 5e-44 DEA(D/H)-box RNA helicase family protein (.1) AT1G55150 150 / 2e-39 DEA(D/H)-box RNA helicase family protein (.1) AT3G22330 145 / 3e-37 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT1G72730 140 / 2e-36 DEA(D/H)-box RNA helicase family protein (.1) AT3G19760 139 / 5e-36 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT2G33730 142 / 7e-36 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G51280 141 / 8e-36 DEAD-box protein abstrakt, putative (.1) AT5G63120 139 / 3e-35 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G33370 139 / 3e-35 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038140 [exp] 690 / 0 AT1G12770 390 / 2e-132 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031761 [exp] 156 / 7e-42 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10031182 [exp] 155 / 1e-41 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 148 / 9e-39 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 148 / 1e-38 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10001057 [exp] 149 / 4e-38 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10015187 [exp] 147 / 2e-37 AT2G33730 1083 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030075 [exp] 145 / 3e-37 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030523 [exp] 143 / 2e-36 AT2G40700 799 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G123600 [exp] 676 / 0 AT1G12770 711 / 0.0 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G102501 [exp] 171 / 5e-51 AT1G12770 200 / 2e-62 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G013900 [exp] 177 / 1e-49 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 154 / 2e-41 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.007G068800 [exp] 150 / 6e-40 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G038300 [exp] 146 / 4e-38 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G093900 [exp] 144 / 4e-38 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.012G045800 [exp] 145 / 9e-37 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G000500 [exp] 144 / 2e-36 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.005G000100 [exp] 144 / 2e-36 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10010686 pacid=23141667 polypeptide=Lus10010686 locus=Lus10010686.g ID=Lus10010686.BGIv1.0 annot-version=v1.0 ATGCCGGCTTTAGCTTCAACAACTCGGCTCCTTTTTCTTGCTGCTGGACACTCATTACTTCCTGCTAATATGTCCATGTGTCGTCATTCGATTAGCTTCT TCAGTCGGGTTGCTAAAGATCATCGTGGTCCTTTGACTCTCGCCAGCCTGGGATTTAACGAGGAGTCACTTGGCGATAGGGGAAGGAAGCTTAAATCTGA GGATGTGAGACTGAGGTCTCCGGTTGAAAATCAGAAGGCTAAAGTTAAGCCAGTTAGTATTAGAGCTGGTAAGGCGACAACAAGATCAGTTGAGGATCTA GCCCTTGCTCCATTCTCTGCGAAATCATTCTCCGAGCTTGGCCTTCCACCATTGCTGATCGAGAGATTAGAGAGTGAAGGCTTCAATGTACCAACCGACG TGCAATCTGCTGCAGTTCCAACCATTTTAAAGGACCATGATGTTGTGATACAGTCTTATACTGGGTCGGGCAAAACATTGGCATATCTCCTTCCTATACT AGCCGAGATCGGGCCTCTCAAGGATGGTGTTAAGGCCAATGATGGTGGTAGGAAGAGCAAAGATATAGAAGCAGTAATTGTGGCTCCATCAAGAGAGCTC GGGATGCAGATAGTGAGGGAGTTTGAGAAGCTCTTAGGACCCGAAAACAAGAGAGTTGTTCAACAACTTGTTGGTGGTGCGAACCGGTCTAGACAGGAAG AAGCTCTCAAAAAGAACAAGCCAGCAATTGTTGTTGGCACGCCCGGTAGAATAGCCGAGATTAGTGCTTCAGGTAAACTCCACACCCATGGCTGTCGTTT CCTGGTGCTGGACGAAGTCGACGAGCTTCTCTCGTTCAATTTCCGCGAAGCTATGCACCGGATATTGGATCATGTTGGGAGAAGACCAAGTGCAGATGCT AAAGGAATGAAGAGTGATCCCAATCGTCGCACTATTTTGGTATCTGCAACGGTTCCTTATTCAGTGATAAGGGCAGCTAGAAGTTGGGCGAATAATCCGG TTCTTGTCCAAGCCAAGACTATAATCCCGCTCGAATCGGTTCCTCCATCTGGACCTGTGGATTCGTTGTCGACTGAATCGGATTCGAATCCACAGCCAGC AGCAGGAGCATCAGTGGTGAGCTTGCCTCCATCTCTGAAGCATTACTATACCGTGTCGAAGATGCAACACAAGGTTGATGCTTTGAGGAGATGTGTTCAT GCGCTTGATGCAAAATGTGTGATAGCCTTCATGAACCACAGCAGGCAACTGAAAGATGTGGTGCACAAACTGGAGGCACGAGGGTTGAATGCTGCGGAGT TACACGGAGATCTTGGCAAGCTTGGTAGATCAACGGTGCTAAAGAAGTTCAAGAATGGGGAGTTGAGGGTTTTGGTGACCAATGAGCTTTCGGCAAGGGG GTTAGATGTCCCGGAATGTGATGTTGTCATTAATCTGGACTTGCCGACAGACTCGACACACTATGCACACCGTGCTGGCCGAACAGGAAGGCTGGGAAGG AGAGGGAGTGTGGTGACGATATGTGAAGAGTCAGAGTTGTTTGTTGTGAGGAAATTGCAGAGGCAGCCTTGTGGGGCCAAAGGATGA
AA sequence Show only first row Show all	>Lus10010686 pacid=23141667 polypeptide=Lus10010686 locus=Lus10010686.g ID=Lus10010686.BGIv1.0 annot-version=v1.0 MPALASTTRLLFLAAGHSLLPANMSMCRHSISFFSRVAKDHRGPLTLASLGFNEESLGDRGRKLKSEDVRLRSPVENQKAKVKPVSIRAGKATTRSVEDL ALAPFSAKSFSELGLPPLLIERLESEGFNVPTDVQSAAVPTILKDHDVVIQSYTGSGKTLAYLLPILAEIGPLKDGVKANDGGRKSKDIEAVIVAPSREL GMQIVREFEKLLGPENKRVVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIAEISASGKLHTHGCRFLVLDEVDELLSFNFREAMHRILDHVGRRPSADA KGMKSDPNRRTILVSATVPYSVIRAARSWANNPVLVQAKTIIPLESVPPSGPVDSLSTESDSNPQPAAGASVVSLPPSLKHYYTVSKMQHKVDALRRCVH ALDAKCVIAFMNHSRQLKDVVHKLEARGLNAAELHGDLGKLGRSTVLKKFKNGELRVLVTNELSARGLDVPECDVVINLDLPTDSTHYAHRAGRTGRLGR RGSVVTICEESELFVVRKLQRQPCGAKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10010686 [exp]	0	1
AT5G01590			unknown protein		Lus10012500 [exp]	1.0	0.9487
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Lus10005787 [exp]	2.4	0.9440
AT3G06980			DEA(D/H)-box RNA helicase fami...		Lus10039091 [exp]	3.0	0.9281
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001921 [exp]	3.6	0.9140
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10021118 [exp]	6.3	0.9259
AT1G06190			Rho termination factor (.1.2)		Lus10024898 [exp]	6.9	0.9187
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10011129 [exp]	7.0	0.9174
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10038788 [exp]	8.9	0.9266
AT3G02060			DEAD/DEAH box helicase, putati...		Lus10012587 [exp]	11.0	0.8840
AT3G61780		EMB1703	embryo defective 1703 (.1)		Lus10004004 [exp]	12.0	0.8862

Compare expression of checked genes

Lus10010686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.