Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10320 242 / 1e-70 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G27650 65 / 4e-11 C3HZnF ATU2AF35A U2 snRNP auxiliary factor small subunit, putative (.1.2) AT5G42820 64 / 4e-11 C3HZnF ATU2AF35B Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G44785 56 / 5e-10 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038139 [exp] 462 / 2e-155 AT1G10320 570 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10020540 [exp] 64 / 4e-11 AT1G27650 323 / 7e-112 U2 snRNP auxiliary factor small subunit, putative (.1.2) Lus10008648 [exp] 65 / 5e-11 AT5G42820 358 / 6e-125 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10009389 [exp] 65 / 6e-11 AT5G42820 362 / 3e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10002845 [exp] 62 / 4e-10 AT5G42820 355 / 1e-123 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10003375 [exp] 62 / 4e-10 AT5G42820 357 / 3e-124 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228600 [exp] 262 / 2e-77 AT1G10320 462 / 1e-151 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.004G188900 [exp] 65 / 5e-11 AT5G42820 311 / 4e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.006G116700 [exp] 64 / 5e-11 AT5G42820 295 / 7e-100 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.002G003000 [exp] 64 / 7e-11 AT1G27650 349 / 2e-121 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.005G258000 [exp] 62 / 3e-10 AT1G27650 352 / 1e-122 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.009G149600 [exp] 44 / 2e-05 AT1G27650 137 / 1e-41 U2 snRNP auxiliary factor small subunit, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10010687 pacid=23141680 polypeptide=Lus10010687 locus=Lus10010687.g ID=Lus10010687.BGIv1.0 annot-version=v1.0 ATGATCACAAGGGATTGTCACACAAGCCCAGAGCTGGACCTTCCTACTGGAAACAAGCACCTGATTCTGACAGGCAAGACACAAAGTGAGGAGGTGGTAA CATCAAGCAAGGATCTCAGAAGGGAAGAGGAAGATGAGGTGATGAGCTATATCCCAGTTGATCGGAAACGCCGAAGACAAGGCAATGAACTCGAGGATGA TGAAGCCATAGAGGAGGGGAGTCGACAACCAAGTAAGTCCCCAAGAAGAGGATGGATTCGAATTTCTGACGGGTCTGCCTACGGCAGCCTGTCATCGAGA GTGATCGCTGGGGTGGCGGATGGTGCTCCTAGCTACCCCTTGATGTCTTGTTTTATTGTGATAGAACTTAATGAGTCTGATCGAGAAATGGTTGTTAGGA GATTAAGGATGCGAAGTATTATATACTTCTCCCTTGCCGCCTGTAGGTGGGTAGCGACTCTCAAATGTCAGGGTGCTTCTAAAGACGATGGGGTTGAGGA AGACAGTAACTGGGAATATGTAGAGGAAGGGCCACCTGAAATTATCTGGCAAGGAAATGAGATAATTGTCAGGAAAAAAAGGGTTCGAGTACCCAAAAAG CATGTTGATGTACAAACGAAAGAGGATGCCAATAGGCCAACGTCTAATCCTCTTCCTCCAGAACCTGAGGCATCAAGTCTGTCAGCACAAGAGATGCTTA AAAATGTTGCTCAAGAAGTACTGAACTTCGGTACTGAGCAGGATAAAGCTCATTGCCCGTTCCATTTAAAAACTGGATCTTGTCGGTTTGGCCAGCGTTG CAGCCGGGTGCATTTTTATCCCGATAAAGCATGTACTCTGCTTATCAAGAATATGTACAATGGTCCTGGCCTTGCTTGGGAACAAGATGAAGGGCTTGAG GTTACCTGTGAATTTGTCAATATCACTAGATGGAAGGTTGCCATATGTGGGGAGTACATGAAGTCAAGACTACAGAATTGTTCTCGTGGAAGTGCCTGCA ATTTTATTCATTGCTTTCGAAATCCTGGTGGAGACTATCAGTGGGCAGATTGGGATAAACCTCCACCAAGGTTTTGGATGGAAAAAATGACTGTTTTATT TGGTTGCTCTGAAGCTACTGATCGTTATGTTGATAACGAAGAGAAAACAGGGAGGACACCTAGCAGCGCAAATAAAGAGAGAGCTCGTTATTCTAGAAGA TCCATGTCCAGGGATTTTGAGCACCAAAATGATCGCTATGGTAGAAAAAGGGATGGGGAGGATTATAGGGAAGAGGGGCAGGGAAGAAATGTAGATAATG GAAAGAGGCGAAGCAAGAATATTGAGGAAGAAGATGATAGAAGGCTAGATTATAAATGTGAAGGTGGTTGGTCAGATAGGGACGTTGACAGCAACACAAA ACGGGAGTACAGAGGGAGTAGCAGGCGAGCAAGAAGTAGTGGGAGACAGAGGTCAGATGTGGATGGACATGGAAATGGAAATGGTGGTGGTAGGGATAGG GAGAGAGAAAGCAGGCACAGCAAAAGTAAAATTGATGTTTACAGTAGAAGAATGCCTTTGGGTGAAGAAGAGTTGGAGGATGATGGTAGGCATTATGAGA GAGGTGACATGGATAGTCTGTTAGAGAAAGAAACCAGAGAAAGACGAAGGTGGAACGATGATCATGAGTCAGCTGATGATGAAGCTACCAAGATGTTAAT GCTGAAGAAGACGAAGAAGCTGGAAAGGGAAAGTCGTTCAAATCGGAAACACTGGAGTACAAAGCGTACGCAACAGGATTCCTCCATGCATGATTATGAA GAAGATCGGTGGGAAGGCAACGTTTTTAAAAGTTAA
AA sequence Show only first row Show all	>Lus10010687 pacid=23141680 polypeptide=Lus10010687 locus=Lus10010687.g ID=Lus10010687.BGIv1.0 annot-version=v1.0 MITRDCHTSPELDLPTGNKHLILTGKTQSEEVVTSSKDLRREEEDEVMSYIPVDRKRRRQGNELEDDEAIEEGSRQPSKSPRRGWIRISDGSAYGSLSSR VIAGVADGAPSYPLMSCFIVIELNESDREMVVRRLRMRSIIYFSLAACRWVATLKCQGASKDDGVEEDSNWEYVEEGPPEIIWQGNEIIVRKKRVRVPKK HVDVQTKEDANRPTSNPLPPEPEASSLSAQEMLKNVAQEVLNFGTEQDKAHCPFHLKTGSCRFGQRCSRVHFYPDKACTLLIKNMYNGPGLAWEQDEGLE VTCEFVNITRWKVAICGEYMKSRLQNCSRGSACNFIHCFRNPGGDYQWADWDKPPPRFWMEKMTVLFGCSEATDRYVDNEEKTGRTPSSANKERARYSRR SMSRDFEHQNDRYGRKRDGEDYREEGQGRNVDNGKRRSKNIEEEDDRRLDYKCEGGWSDRDVDSNTKREYRGSSRRARSSGRQRSDVDGHGNGNGGGRDR ERESRHSKSKIDVYSRRMPLGEEELEDDGRHYERGDMDSLLEKETRERRRWNDDHESADDEATKMLMLKKTKKLERESRSNRKHWSTKRTQQDSSMHDYE EDRWEGNVFKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10010687 [exp]	0	1
AT1G13750			Purple acid phosphatases super...		Lus10036902 [exp]	3.9	0.8764
AT1G60200			splicing factor PWI domain-con...		Lus10030866 [exp]	7.7	0.8476
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10013121 [exp]	9.3	0.8726
AT5G19900			PRLI-interacting factor, putat...		Lus10019670 [exp]	10.2	0.8505
					Lus10007298 [exp]	12.6	0.8490
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10020809 [exp]	13.7	0.8535
AT1G50940		ETFALPHA	electron transfer flavoprotein...		Lus10011156 [exp]	16.6	0.8618
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10019188 [exp]	17.3	0.8375
AT2G04865			Aminotransferase-like, plant m...		Lus10006393 [exp]	17.5	0.8320
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10032609 [exp]	24.9	0.8488

Compare expression of checked genes

Lus10010687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.