Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39952 613 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 350 / 1e-111 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 350 / 4e-110 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39350 333 / 1e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 329 / 6e-104 MEF22 mitochondrial editing factor 22 (.1) AT5G27110 327 / 5e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 330 / 8e-103 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 324 / 2e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G47840 320 / 2e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 322 / 3e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038138 [exp] 1149 / 0 AT4G39952 793 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033858 [exp] 354 / 1e-114 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035619 [exp] 340 / 6e-107 AT4G35130 794 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024936 [exp] 337 / 9e-106 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031028 [exp] 333 / 1e-105 AT4G19191 727 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 338 / 2e-105 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 337 / 2e-105 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022890 [exp] 335 / 3e-105 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 335 / 5e-104 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G074000 [exp] 776 / 0 AT4G39952 892 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 369 / 5e-118 AT3G22690 582 / 0.0 unknown protein Potri.004G059400 [exp] 369 / 4e-117 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 364 / 3e-116 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G052200 [exp] 363 / 7e-115 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 349 / 2e-111 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 349 / 2e-108 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 341 / 4e-107 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G124400 [exp] 336 / 9e-107 AT5G39350 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 340 / 1e-106 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10010688 pacid=23141675 polypeptide=Lus10010688 locus=Lus10010688.g ID=Lus10010688.BGIv1.0 annot-version=v1.0 ATGGACTATGCGTCTCGTATATTTGAGAAGATTACCGAGAGAGATGTGGTATCATGGACTGCTCTCATTATTGGCTATGTGCATAATGGTGAGAGTGAAA AGGGTCTAGAGTGTCTCTGTCAGATGCATCGAAATGATCTAGACGGTGAGAATATAAATTTCAGGACACTGGAAGGTGGATTTCAAGCCTGTGTGAATTT AGGTGCTTTGGTTCAAGGAAGGTGTTTACATGGTTTTGCTGTGAAAACTGGACTTGGGTGTTGGCAAGCTATTCAATCTTCCCTTTTGTTAGTGTATTCT AAGTTCGGAAGCATTGAAGAAGCTGGCCGTTCTTTTTCTGAAGTGGACAACAAGGATCTTTTCTCTTGGACTTCAATTATTGGCCTCCACGCAAGGTTAG GGCTTATGAATGATTGTATGGCCTTGTTTTGGGATATGCTAGCTGCTGATAACTATCCAGATGAGATTGTTATGAGTTGCATGCTTGTAGGATTTGGCAA CTCATCAAGGGTAGATGAAGGAAAAAGTTTTCATTGTCTTATCATAAGGAGAAACTTTACTGTAGATCAGATGGTCGCGGATGCTTTGCTGTCAATGTAC TGCAAATTTGGACTTATAAGATCAGCTGAAAAGCTCTTTTATGGGCTAAATAAACGGAATGAAGAGTCTTGGAACTCTATGGTTTGTGGTTTTGCTAAGG CAGGACGGGAAGACAAGTGCATAGACCTTTTCAGAGGAATGCAAAAACTGGGTTTTAAACCGAATTCTAATAGTTTGGTCTCTGTATTAACTTCGTGTTC TCAACTACGAGAAACTTCCTTCTGCTGCTGCTCCCTTCACTGCTACATAATCAAGAATCTTATGGAAGGCGACATCTCAATTGTGAATTCACTCATAGAC ACGTACGGAAAGGATGGTAATTTTATCTCTGCACGAAGGATTTTTTGTGGAAGAGATAAAGATATTGTCACTTGGAACACAATGATTGCAGCATACAATC ATAGCAAGTGCTTTACTGAGGCCATTTCATTATTTGATGAAATGATGCTGAAAAATGTAAAGCCTAATACAGCAACATTGGCAACTGTTCTTTCGGCTTG TTCTCAAGTTGCTGATTTGGAGAAAGGAGAAAAGGTTCATCATTTGATCAAGAATGACGAGGATATTGAGCTAAATGTATCCCTTTCAACTGCATTAGTC AACATGTATGCAAAATGCGGACAACTCGAGAAATCGAGAGAAATTTTTAACGCGATGAAAGATAGAGATACTATTTCTTGGAATGTAATGATTGCAGGTT ATGCAATGCATGGCGACACAGAATCTGCAATCAAATTATTCAAGCAAATGGAGCAGTCAAATGTTGTGCCAAATTCAGTTACTTTCCTCCATCTCCTCTC AGCTTGTTCTCATTCGGGGTTTGTTGATGAAGGCAAGCTTCTTTTCAACAGAATGAAAAAGTATTCTGTGATTCCTACTCTAAAGCATTATACTTGTATT GTTGATCTTCTTGGAAGATCAGGTAATCTACTGGAAGCTGAAAAGTTAGTATTGTCAATGCCGGTTCGACCTGATGGAGGTGTGTGGGGTGCTTTGTTAA GTGCTTGTAAGATGCATGATGACATTGAGACAGGGACAAGGATTGCAAAGGAAGCGATTAAGGCAGATCCCAGAAATGATGGATACTATGTAGTCATGTC TGATATGTATAGCTCCATTGGAAGATGGAAGGAGGCAGAAGAAGCAAGAGAAATGATGAAGGAAAGGGGCATAGAAAGGAGAGCTGGTTGGAGTTTGGTC TAA
AA sequence Show only first row Show all	>Lus10010688 pacid=23141675 polypeptide=Lus10010688 locus=Lus10010688.g ID=Lus10010688.BGIv1.0 annot-version=v1.0 MDYASRIFEKITERDVVSWTALIIGYVHNGESEKGLECLCQMHRNDLDGENINFRTLEGGFQACVNLGALVQGRCLHGFAVKTGLGCWQAIQSSLLLVYS KFGSIEEAGRSFSEVDNKDLFSWTSIIGLHARLGLMNDCMALFWDMLAADNYPDEIVMSCMLVGFGNSSRVDEGKSFHCLIIRRNFTVDQMVADALLSMY CKFGLIRSAEKLFYGLNKRNEESWNSMVCGFAKAGREDKCIDLFRGMQKLGFKPNSNSLVSVLTSCSQLRETSFCCCSLHCYIIKNLMEGDISIVNSLID TYGKDGNFISARRIFCGRDKDIVTWNTMIAAYNHSKCFTEAISLFDEMMLKNVKPNTATLATVLSACSQVADLEKGEKVHHLIKNDEDIELNVSLSTALV NMYAKCGQLEKSREIFNAMKDRDTISWNVMIAGYAMHGDTESAIKLFKQMEQSNVVPNSVTFLHLLSACSHSGFVDEGKLLFNRMKKYSVIPTLKHYTCI VDLLGRSGNLLEAEKLVLSMPVRPDGGVWGALLSACKMHDDIETGTRIAKEAIKADPRNDGYYVVMSDMYSSIGRWKEAEEAREMMKERGIERRAGWSLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39952			Pentatricopeptide repeat (PPR)...		Lus10010688 [exp]	0	1
AT1G07650			Leucine-rich repeat transmembr...		Lus10010950 [exp]	3.2	0.9204
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10041957 [exp]	4.7	0.9236
AT1G30140			unknown protein		Lus10024751 [exp]	4.9	0.9320
AT1G78070			Transducin/WD40 repeat-like su...		Lus10036428 [exp]	5.7	0.9068
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10042895 [exp]	5.7	0.9148
					Lus10022017 [exp]	7.5	0.9211
AT4G03115			Mitochondrial substrate carrie...		Lus10024769 [exp]	7.7	0.9187
AT1G61780			postsynaptic protein-related (...		Lus10002066 [exp]	8.1	0.9032
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	8.9	0.9204
AT1G11330			S-locus lectin protein kinase ...		Lus10015422 [exp]	11.4	0.9089

Compare expression of checked genes

Lus10010688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.