Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23390 622 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038137 [exp] 852 / 0 AT2G23390 658 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228500 [exp] 655 / 0 AT2G23390 669 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF04339 [flax] [poplar] FemAB_like Peptidogalycan biosysnthesis/recognition
Representative CDS sequence Show only first row Show all	>Lus10010689 pacid=23141698 polypeptide=Lus10010689 locus=Lus10010689.g ID=Lus10010689.BGIv1.0 annot-version=v1.0 ATGGAAGGTATCCGTGTGTCGTCTGTGAGAAGAGACTGCAGAGAGTGTGGCCATGGCAGCAGTGAGCAACTGCTACTGCAAGCCGTCGCCATTCCTCAGT CACTTCCCATCTCGGGGATATGTTCGTCCTACGGCTACGCTCAGAATACCCGGAGGAACAGAAAGGCATCTACAATCACTGCAATATTTTGGGGACCAAA GAAGTCTGCGGAACCAAAGGAACTAGATCTTTCATTAGGTGATTTCACACTAAGAGAGTCATCCCCAGAGGGAGCCTCTGAATCCCAAGATTTATCCAAA AAGGTTTCACTTTCAATTATTTCTTCAATCTCCGAGGTTCCAGCAGATGCTTGGGATGCATGCCATCTGGACACAACAGGCCTTGAGAAATATAATCCGT TCCTGTCCCATTGTTTCCTTTCATGCTTGGAAGAGACAGGCTGTGCTGTCAAGGAGACAGGATGGGCTCCTAGCCACATTGTTGCTAAGGATGCTGATGG CACTGTTCTAGGTGTTGTTCCACTTTATCTGAAAAGCCACTCTTATGGGGAATTTGTGTTTGATCATTCTTGGGCTGATGCCTATTATAGTTTTGGGGCA AGATATTATCCAAAGTTCCAGTCTTGTGTGCCTTTCACTCCCGTAACTGGTCCAAGGATTCTAATTCGTAATACCCCACTAAGAGATCAAGTCTTTGATG TTATTGTTTCCACTCTCAAGGAACTAACCACTAAGTCCGAGCTCTCTTCATTACACATTACCTTCCCCACAGAGAAAGAGTGGGATAGATTGAGGGGAAG TGGATTCCTTCAGAGGATTGGAATGCAGTACCACTGGAAAAACCGTAATTATAAGAATTTTGATGAATTCTTGATGGATTTGAAACAAAAGAAACGGAAG AGCATCCGCCAAGAGCGTAAAAAGGTTTCGGCACAAAACCTTACCATGAAACGGCTCCGAGGTTATGAGATAAAGGGAAACCATTGGGATTCCTTCTACA CATTCTACAGAAACACAACTGACAACAAGTGGGGTACTCCATACCTCACGAGAGATTTCTTCCACGCCATGGGATCGAAGATGGGAGATCAAGTGCTGCT TGTTGTTGCTGAAGAAGGGGACGAAGTTGTTGCAGGAGCACTTAATCTCATTGGCGGAGACACGCTATTTGGACGCCTATGGGGATGCCACCCCAGAGTC TACTATCCTGGCCTACACTTTGAGGCATGTTATTACCAGGCAATGGAAGCAGCAATTGAACTGAATTTGGCAACTGTGGAGGCTGGAGCTCAGGGTGAGC ACAAGATTCAGCGTGGTTATCTACCAGTGACAACCTATAGCAGCCATTATTTGACAGATGAAGGTTTCCGGACAGCCATTCAAGATTTCTTAGTGAGAGA ATCATCTCAGGTCAATATGGTTATGAAGATGTTGCGAGATGATGGTCCATTCAAGGACGGGATAGAATAG
AA sequence Show only first row Show all	>Lus10010689 pacid=23141698 polypeptide=Lus10010689 locus=Lus10010689.g ID=Lus10010689.BGIv1.0 annot-version=v1.0 MEGIRVSSVRRDCRECGHGSSEQLLLQAVAIPQSLPISGICSSYGYAQNTRRNRKASTITAIFWGPKKSAEPKELDLSLGDFTLRESSPEGASESQDLSK KVSLSIISSISEVPADAWDACHLDTTGLEKYNPFLSHCFLSCLEETGCAVKETGWAPSHIVAKDADGTVLGVVPLYLKSHSYGEFVFDHSWADAYYSFGA RYYPKFQSCVPFTPVTGPRILIRNTPLRDQVFDVIVSTLKELTTKSELSSLHITFPTEKEWDRLRGSGFLQRIGMQYHWKNRNYKNFDEFLMDLKQKKRK SIRQERKKVSAQNLTMKRLRGYEIKGNHWDSFYTFYRNTTDNKWGTPYLTRDFFHAMGSKMGDQVLLVVAEEGDEVVAGALNLIGGDTLFGRLWGCHPRV YYPGLHFEACYYQAMEAAIELNLATVEAGAQGEHKIQRGYLPVTTYSSHYLTDEGFRTAIQDFLVRESSQVNMVMKMLRDDGPFKDGIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23390			unknown protein		Lus10010689 [exp]	0	1
AT3G07670			Rubisco methyltransferase fami...		Lus10016087 [exp]	1.0	0.9139
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Lus10019895 [exp]	4.5	0.8797
AT3G56160			Sodium Bile acid symporter fam...		Lus10019540 [exp]	4.9	0.8619
AT3G56160			Sodium Bile acid symporter fam...		Lus10043384 [exp]	4.9	0.8473
AT1G75100		JAC1	J-domain protein required for ...		Lus10018811 [exp]	6.9	0.8503
AT5G58260		NdhN	NADH dehydrogenase-like comple...		Lus10019123 [exp]	7.7	0.8618
AT4G13670		PTAC5	plastid transcriptionally acti...		Lus10011733 [exp]	12.6	0.8682
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10030161 [exp]	13.7	0.7863
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10025080 [exp]	14.5	0.8446
AT4G33490			Eukaryotic aspartyl protease f...		Lus10033503 [exp]	19.7	0.7780

Compare expression of checked genes

Lus10010689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.