Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49840 610 / 0 ATP-dependent Clp protease (.1) AT5G53350 488 / 2e-167 CLPX CLP protease regulatory subunit X (.1) AT1G33360 480 / 3e-163 ATP-dependent Clp protease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000933 [exp] 502 / 1e-170 AT1G33360 711 / 0.0 ATP-dependent Clp protease (.1) Lus10040561 [exp] 477 / 2e-161 AT1G33360 721 / 0.0 ATP-dependent Clp protease (.1) Lus10036701 [exp] 469 / 4e-158 AT5G53350 706 / 0.0 CLP protease regulatory subunit X (.1) Lus10037222 [exp] 460 / 2e-157 AT5G53350 651 / 0.0 CLP protease regulatory subunit X (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G229400 [exp] 720 / 0 AT5G49840 701 / 0.0 ATP-dependent Clp protease (.1) Potri.013G089500 [exp] 511 / 2e-174 AT1G33360 742 / 0.0 ATP-dependent Clp protease (.1) Potri.015G012900 [exp] 464 / 4e-158 AT5G53350 675 / 0.0 CLP protease regulatory subunit X (.1) Potri.012G015600 [exp] 459 / 3e-156 AT5G53350 709 / 0.0 CLP protease regulatory subunit X (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily) CL0671 [flax] [poplar] AAA_lid PF10431 [flax] [poplar] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Lus10010691 pacid=23141687 polypeptide=Lus10010691 locus=Lus10010691.g ID=Lus10010691.BGIv1.0 annot-version=v1.0 ATGATTTCACTTCTCCGTCGACCCAAAACGACCACCCCCGCGGCGGCGGCCGCCCTCTTCAAACACCTTACTCAGGAGATTTTCCCACCTTCTGTCACAG CCCCTGACCCTTCCAAACCCTTCTTTTCAGCTCTATCAACGACGAGAGCCTGGGGCCTTGGGTCTCTTAAGCGCCAATTGTGCGACAAGACCATCAAGGA CTACGATCATATTAGGGCTGACGTCAATTGTCCTCGTTGCTCCTCCCAGATGCCGGTGCTCTTCTCCAACCGCCCCTTGTCCATTTCCGGCCGGGAAGCT GGGATTTTTCAGGCGGTCAATTTCTGTCCCAACTGCAAAACAGCCTACTATTTCCGGCCGTTCAAATTGGAACCGTTACAAGGAAGCTTCATTGAGCTTG GGAAGGTTAAAGGTTTTGAGAATACTACTAATAATAATAACAACCCTAGCAGTACTTGTTGCAGTAGTGGTACTAGCAGTGGAAGAGACGGAAAATTTAG GGATAAAGAGGGGTTCGTCGAGAAAGATTGTGGCAGGATTGGAGATTCAGAGGTATCAGGTGATGTGAGGTTGGAGAGGGAGTTGCCTACTCCAAAGGAG ATATGTAAAGGGCTTGACGAGTTTGTCATTGGACAAGAGAAAGCCAAAAAGGTGCTTGCTGTGGCAGTGTACAATCATTACAAAAGGATTTATCATTTGT CCTGGCAGAATGAGCCTGATTCGGAATCGAGTGGAATGGATGACATAAATGAGGACAATGAATTTGTTGAGTTAGACAAGAGCAATGTATTACTGTTGGG ACCAACTGGCTCAGGTTATGTTGGTGAAGATGTCGAATCATTGTTGTACAAGCTCTTAGCGGTAGCAGAATTCAATGTGGAAGCAGCTCAGCGAGGGATT GTTTATATTGATGAAGTTGATAAAATAACCAAGAAGGCTGAGAGTTCAAATGTTGGTAGAGACGTATCTGGAGAAGGTGTTCAACAGGCCTTGCTGAAGA TGCTCGAAGGAACAGTAGTAAATGTTCCTGTTCCTGATAAAGGACCCCGCAAACCTAACCGTGGTGATACAATTCAGATGGATACAAAAGACATCCTTTT CATATGCGGTGGTGCATTTGTGGATTTGGAGAAAACCATTTCAGAGAGACGACAAGATGCTTCTATTGGCTTTGGAGCTCCAGTTCGTGAGCAGATGAGG AGAACTGGCGTGGCTAATGCTTTGGTGACTTCATCATTGCTCGAATCTGTAGAAAGTGGGGATCTTGTGGCATATGGTTTGATCCCTGAATTTGTTGGAA GGTTTCCCATTCTAGTGAGCTTATCAGCTTTAACTGAGGACCAACTTGTTCAGGTCCTGATGGAGCCAAAAAATGCACTTGGGAAACAATACAAGAAGAT GTTTAACATGAACGATGTTAAGTTGCACTTTTCCCGGACTGCACTGAGATTGATTGCGAAGAAAGCAATGGCCAAAAACACCGGTGCGCGAGGACTCAGA GCCATCTTGGAAAACATTCTCACTGAAGCAATGTTTGAGGTTCCTGATAATGAAGGAGGAATAAGTGCAGTGGTGGTGGATGGGGAGGCTGTCGGAACAG TAGATTCACCAGGTTGTGGAGCGAAACTTCTTCGCGAGTCTAGAGATTTTGTGGGGAAATGTGAAGAAGCATCCTTCGTGTTGGAAGGGGAGGCAGGAGG ACTCGAGGCCCGAGCAGTGCTGCTGTAA
AA sequence Show only first row Show all	>Lus10010691 pacid=23141687 polypeptide=Lus10010691 locus=Lus10010691.g ID=Lus10010691.BGIv1.0 annot-version=v1.0 MISLLRRPKTTTPAAAAALFKHLTQEIFPPSVTAPDPSKPFFSALSTTRAWGLGSLKRQLCDKTIKDYDHIRADVNCPRCSSQMPVLFSNRPLSISGREA GIFQAVNFCPNCKTAYYFRPFKLEPLQGSFIELGKVKGFENTTNNNNNPSSTCCSSGTSSGRDGKFRDKEGFVEKDCGRIGDSEVSGDVRLERELPTPKE ICKGLDEFVIGQEKAKKVLAVAVYNHYKRIYHLSWQNEPDSESSGMDDINEDNEFVELDKSNVLLLGPTGSGYVGEDVESLLYKLLAVAEFNVEAAQRGI VYIDEVDKITKKAESSNVGRDVSGEGVQQALLKMLEGTVVNVPVPDKGPRKPNRGDTIQMDTKDILFICGGAFVDLEKTISERRQDASIGFGAPVREQMR RTGVANALVTSSLLESVESGDLVAYGLIPEFVGRFPILVSLSALTEDQLVQVLMEPKNALGKQYKKMFNMNDVKLHFSRTALRLIAKKAMAKNTGARGLR AILENILTEAMFEVPDNEGGISAVVVDGEAVGTVDSPGCGAKLLRESRDFVGKCEEASFVLEGEAGGLEARAVLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49840			ATP-dependent Clp protease (.1...		Lus10010691 [exp]	0	1
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10024026 [exp]	5.1	0.8327
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10006651 [exp]	11.0	0.8310
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10007064 [exp]	12.2	0.8039
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10011940 [exp]	15.0	0.7937
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10015345 [exp]	15.4	0.7755
AT4G37440			unknown protein		Lus10014864 [exp]	15.5	0.7893
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	18.7	0.8040
AT2G25760			Protein kinase family protein ...		Lus10037565 [exp]	19.0	0.7475
AT5G08560			transducin family protein / WD...		Lus10001410 [exp]	19.7	0.7797
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Lus10028817 [exp]	20.6	0.7112

Compare expression of checked genes

Lus10010691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.