Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49820 632 / 0 RUS6, EMB1879 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) AT2G31190 153 / 3e-41 WXR1, RUS2 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) AT3G45890 143 / 1e-36 RUS1 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) AT1G13770 124 / 1e-30 RUS3 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) AT2G23470 114 / 4e-27 RUS4 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) AT5G01510 107 / 1e-24 RUS5 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038136 [exp] 919 / 0 AT5G49820 706 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10001413 [exp] 160 / 2e-42 AT3G45890 658 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10001047 [exp] 159 / 3e-42 AT3G45890 653 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10003558 [exp] 137 / 2e-35 AT2G31190 649 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10036909 [exp] 133 / 8e-34 AT1G13770 627 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10022474 [exp] 128 / 1e-31 AT2G23470 566 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10016778 [exp] 127 / 2e-31 AT2G23470 570 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10033888 [exp] 123 / 2e-30 AT2G31190 588 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10037076 [exp] 96 / 5e-21 AT1G13770 583 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G229500 [exp] 706 / 0 AT5G49820 674 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Potri.001G193300 [exp] 158 / 5e-42 AT3G45890 671 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Potri.005G224000 [exp] 144 / 6e-38 AT2G31190 691 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.007G035300 [exp] 119 / 1e-28 AT2G23470 591 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Potri.008G095700 [exp] 114 / 5e-27 AT1G13770 624 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Potri.002G038600 [exp] 92 / 6e-21 AT2G31190 333 / 1e-113 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.006G099700 [exp] 87 / 4e-18 AT5G01510 520 / 0.0 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04884 [flax] [poplar] DUF647 Vitamin B6 photo-protection and homoeostasis
Representative CDS sequence Show only first row Show all	>Lus10010692 pacid=23141697 polypeptide=Lus10010692 locus=Lus10010692.g ID=Lus10010692.BGIv1.0 annot-version=v1.0 ATGGCTCCCACTCCGATCAAAATCAACAAATCGCCGAATCCAACGGCCCAGTCACTCACTACCACCGCCACTTCCCAAGATGCGCGCCTCCTCGTTCGTG AAACCCTCCGGATTAGCGCCAATCTCGCTTCCGCTCCCGCTCCCGCTCCTTCCAATGCCACCGCTGGGCTGCAGCAATTTCCCGCCGCCGATAGGATGAA GATTGGCCTCGTGGAAAATGACTTCCTTCAGTCTAGTCTAAGTCTGATCTGCTGCGAGGAGATTGATGGCCGTCGCTGGAAGTACCTGGCTGAGAATGAT GGTCTCGGCCGCTTTAAGAAGAATTCGATTCGCGCCGTCTCCTTACACGCACCGCCGGCGCCTATCGAGGAGCTGATGTCATTCGTAAGATCCTACGTGG TACCAGAAGGTTTCCCTGACAGTGTCACTCCATCTTATGTCCCTTATATGACCTTCAGAGCCATGAAGCATTTCTTTGGTGGGGCAATGGGTGTTTTTAC GACGAAAACACTGTTAAATTCAGTTGGAGTCGCTCATAGCAAAGCCATCCCGGGAGCTGTTGCTATTAATTGGATTCTGAAGGATGGGGCTGGAAGAGTT GGAAAAATGCTATTTGCTCGGCAAGGAAAGAAATTTGATTATGATCTGAAGCAGCTTCGATTTACTGGCGACCTTCTTATGGAGTTAGGGGCTGGCATTG AGTTGGCAACTGCTGCATTTCCACACCTATTTCTTCCCATGGCATGTGTTGCCAATGTAGCGAAGAATGTTGCAGCTGTGACATCTACGTCTACCCGCAC GCCTATCTATAAAGCTTTTGCCAAAGGCGAAAACATTGGGGATGTCACTGCAAAGGGAGAATGTGTTAGTAATATTGCTGACCTGATGGGAACGGGCCTC AGCATAATGCTTACAAGAAGAAATCCTTCCCTAGTGACAACATTTTCACTCCTTTCATGTGGATATCTTCTCAGCTCTTACCAAGAGGTAAGATCTGTAG TCCTGCACACCTTAAACCGAGCCAGATTCAGTGTGGCAGTGGAGTCGTTCCTCAAGACAGGGCAAGTGCCATCACTGAAAGAGGGAAATGCAATGGAGAA GATATTCAACTTACCTGGTGTGAAGGAGGGACCTATCGTCCTTGGACCAAGATTTAAAGATGCTTTCCAGGATCCGAGCTCATACCTCGCCATAGAACCT TTCTTTGAAAAAGAGGGATATATAGTCACATATAATCCATCCAAGGACAAGGTCTACGCTCTGCTCAAGGATCAGGCAAAGGCAGATGATATACTGAAAG CCGCATTCCATGCTCATGTTCTTCTGCACACCGTACATTCATCACAAAATAGTCGTCAATCTTCGTCTCAAAAGGTGCAAGGCCAGGATAACTCAACCAA CCTTCTCTCAAATGCTGACCTCGGTGATCGTATTGCCGAGTCCTGCAAGATGGTCTCAACCCTTTATGGTCCTTTTAAAAGTAAAACGGCTGAACAGGGA TGGAGGATGTCAGACTTGCTTCTTAATCCAGGGCGGGCTCGGCTAGTGGTAACTGGTTAA
AA sequence Show only first row Show all	>Lus10010692 pacid=23141697 polypeptide=Lus10010692 locus=Lus10010692.g ID=Lus10010692.BGIv1.0 annot-version=v1.0 MAPTPIKINKSPNPTAQSLTTTATSQDARLLVRETLRISANLASAPAPAPSNATAGLQQFPAADRMKIGLVENDFLQSSLSLICCEEIDGRRWKYLAEND GLGRFKKNSIRAVSLHAPPAPIEELMSFVRSYVVPEGFPDSVTPSYVPYMTFRAMKHFFGGAMGVFTTKTLLNSVGVAHSKAIPGAVAINWILKDGAGRV GKMLFARQGKKFDYDLKQLRFTGDLLMELGAGIELATAAFPHLFLPMACVANVAKNVAAVTSTSTRTPIYKAFAKGENIGDVTAKGECVSNIADLMGTGL SIMLTRRNPSLVTTFSLLSCGYLLSSYQEVRSVVLHTLNRARFSVAVESFLKTGQVPSLKEGNAMEKIFNLPGVKEGPIVLGPRFKDAFQDPSSYLAIEP FFEKEGYIVTYNPSKDKVYALLKDQAKADDILKAAFHAHVLLHTVHSSQNSRQSSSQKVQGQDNSTNLLSNADLGDRIAESCKMVSTLYGPFKSKTAEQG WRMSDLLLNPGRARLVVTG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49820		RUS6, EMB1879	ROOT UV-B SENSITIVE 6, Protein...		Lus10010692 [exp]	0	1
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10012053 [exp]	3.0	0.8241
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028196 [exp]	5.5	0.8496
AT4G35335			Nucleotide-sugar transporter f...		Lus10026562 [exp]	6.5	0.8435
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10007538 [exp]	13.9	0.8262
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10030758 [exp]	14.6	0.8420
AT1G75590			SAUR-like auxin-responsive pro...		Lus10024322 [exp]	18.7	0.8296
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Lus10034886 [exp]	20.7	0.8183
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Lus10017889 [exp]	21.4	0.8042
AT1G73180			Eukaryotic translation initiat...		Lus10004803 [exp]	21.6	0.8303
AT2G27460			sec23/sec24 transport family p...		Lus10020622 [exp]	21.6	0.8374

Compare expression of checked genes

Lus10010692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.