Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02540 92 / 2e-23 ZF_HD ATHB21, ZFHD4, ZHD3 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) AT1G14440 90 / 1e-22 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) AT4G24660 86 / 2e-21 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) AT5G65410 82 / 1e-19 ZF_HD ATHB25, ZFHD2, ZHD1 ZINC FINGER HOMEODOMAIN 1, ZINC FINGER HOMEODOMAIN 2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25, homeobox protein 25 (.1) AT5G15210 78 / 4e-18 ZF_HD ATHB30, ZFHD3, ZHD8 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) AT5G39760 76 / 3e-17 ZF_HD ATHB23, ZHD10 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) AT3G28920 76 / 3e-17 ZF_HD ATHB34, ZHD9 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) AT1G75240 74 / 2e-16 ZF_HD ATHB33, ZHD5 zinc-finger homeodomain 5, homeobox protein 33 (.1) AT1G69600 72 / 3e-16 ZF_HD ATHB29, ZFHD1, ZHD11 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) AT2G18350 71 / 8e-16 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010694 [exp] 197 / 6e-64 AT2G02540 215 / 5e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10038135 [exp] 159 / 5e-49 AT2G02540 223 / 7e-71 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10007147 [exp] 81 / 8e-19 AT2G18350 222 / 1e-70 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Lus10015900 [exp] 76 / 7e-18 AT4G24660 145 / 6e-44 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Lus10026010 [exp] 77 / 1e-17 AT1G75240 172 / 2e-52 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10014302 [exp] 76 / 4e-17 AT1G75240 176 / 9e-54 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10031315 [exp] 73 / 8e-17 AT1G75240 137 / 9e-40 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10030679 [exp] 74 / 1e-16 AT5G15210 145 / 2e-42 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) Lus10005244 [exp] 73 / 1e-16 AT5G39760 142 / 1e-41 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G000400 [exp] 98 / 1e-25 AT1G14440 238 / 9e-78 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.004G229600 [exp] 97 / 2e-25 AT1G14440 244 / 1e-79 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.002G102900 [exp] 89 / 3e-22 AT4G24660 209 / 9e-68 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.004G135100 [exp] 84 / 1e-20 AT2G02540 213 / 4e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Potri.002G035200 [exp] 84 / 2e-20 AT1G14440 169 / 2e-50 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.007G024100 [exp] 84 / 4e-20 AT1G75240 186 / 2e-56 zinc-finger homeodomain 5, homeobox protein 33 (.1) Potri.017G082900 [exp] 84 / 4e-20 AT3G28920 215 / 8e-68 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.019G081300 [exp] 82 / 6e-20 AT4G24660 166 / 8e-51 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.005G122500 [exp] 83 / 7e-20 AT2G18350 179 / 2e-54 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Potri.005G158800 [exp] 82 / 8e-20 AT4G24660 204 / 1e-65 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010693 pacid=23141689 polypeptide=Lus10010693 locus=Lus10010693.g ID=Lus10010693.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTGCTGCTGCTGGATCACTGCTGCCCTCTGAATCCGACAACCACAACAACGATGCTGAAGATCATCACCAGCATGAGTACCATAACAACA ACAAGCAGCAGCAAGGGATGAATACGAAGAGGCACAGGACAAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCTTGTTTTTGCTGAGAGTGTTGGTTGGAA GCTACAGAAGCAAGAGGAGAGCGTGGTCCAACAATTCTGCCACGAGATTGGTGTTAACCGTCGTGTGCTTAAGGTCTGGATGCACAATAACAAGCACACT TACCAACATCATCATCATCAAAACGCTGTCGTATCTCGCCCTCCAGTGCTTCATCCATCCACCACCACCACTGCTCCACTCCCGGCTTCTTCTTAA
AA sequence Show only first row Show all	>Lus10010693 pacid=23141689 polypeptide=Lus10010693 locus=Lus10010693.g ID=Lus10010693.BGIv1.0 annot-version=v1.0 MAAAAAAGSLLPSESDNHNNDAEDHHQHEYHNNNKQQQGMNTKRHRTKFSQEQKEKMLVFAESVGWKLQKQEESVVQQFCHEIGVNRRVLKVWMHNNKHT YQHHHHQNAVVSRPPVLHPSTTTTAPLPASS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010693 [exp]	0	1
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010694 [exp]	1.0	0.9950
AT5G67460			O-Glycosyl hydrolases family 1...		Lus10002466 [exp]	1.7	0.9919
AT2G18350	ZF_HD	ATHB24, ZHD6	ZINC FINGER HOMEODOMAIN 6, hom...		Lus10007147 [exp]	2.4	0.9889
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014528 [exp]	2.8	0.9924
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Lus10011906 [exp]	5.0	0.9896
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10029878 [exp]	5.3	0.9912
					Lus10015654 [exp]	6.7	0.9881
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10040522 [exp]	6.9	0.9831
AT1G31310	Trihelix		hydroxyproline-rich glycoprote...		Lus10040629 [exp]	7.2	0.9855
AT4G27660			unknown protein		Lus10032928 [exp]	7.3	0.9758

Compare expression of checked genes

Lus10010693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.