Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69600 122 / 7e-33 ZF_HD ATHB29, ZFHD1, ZHD11 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) AT5G60480 111 / 2e-29 ZF_HD ATHB26, ZHD12 ZINC FINGER HOMEODOMAIN 12, homeobox protein 26 (.1) AT2G02540 113 / 4e-29 ZF_HD ATHB21, ZFHD4, ZHD3 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) AT1G14440 111 / 3e-28 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) AT1G75240 103 / 2e-25 ZF_HD ATHB33, ZHD5 zinc-finger homeodomain 5, homeobox protein 33 (.1) AT4G24660 97 / 1e-23 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) AT5G65410 92 / 2e-21 ZF_HD ATHB25, ZFHD2, ZHD1 ZINC FINGER HOMEODOMAIN 1, ZINC FINGER HOMEODOMAIN 2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25, homeobox protein 25 (.1) AT2G18350 92 / 2e-21 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) AT1G74660 85 / 2e-20 ZF_HD MIF1 mini zinc finger 1 (.1) AT3G50890 87 / 1e-19 ZF_HD ATHB28, ZHD7 ZINC FINGER HOMEODOMAIN 7, homeobox protein 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038135 [exp] 274 / 1e-90 AT2G02540 223 / 7e-71 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10010693 [exp] 198 / 9e-64 AT2G02540 104 / 7e-28 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10026010 [exp] 123 / 4e-33 AT1G75240 172 / 2e-52 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10007147 [exp] 102 / 1e-24 AT2G18350 222 / 1e-70 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Lus10036753 [exp] 79 / 4e-17 AT5G15210 112 / 3e-30 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) Lus10033016 [exp] 75 / 9e-17 AT3G28917 103 / 4e-30 mini zinc finger 2 (.1) Lus10014302 [exp] 78 / 3e-16 AT1G75240 176 / 9e-54 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10015900 [exp] 76 / 3e-16 AT4G24660 145 / 6e-44 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Lus10030679 [exp] 76 / 1e-15 AT5G15210 145 / 2e-42 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G000400 [exp] 180 / 8e-55 AT1G14440 238 / 9e-78 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.005G122500 [exp] 136 / 2e-37 AT2G18350 179 / 2e-54 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Potri.004G229600 [exp] 115 / 8e-30 AT1G14440 244 / 1e-79 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.004G135100 [exp] 105 / 1e-26 AT2G02540 213 / 4e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Potri.007G024100 [exp] 100 / 3e-24 AT1G75240 186 / 2e-56 zinc-finger homeodomain 5, homeobox protein 33 (.1) Potri.005G158800 [exp] 97 / 1e-23 AT4G24660 204 / 1e-65 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.002G035200 [exp] 97 / 5e-23 AT1G14440 169 / 2e-50 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.019G081300 [exp] 96 / 7e-23 AT4G24660 166 / 8e-51 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.002G102900 [exp] 95 / 1e-22 AT4G24660 209 / 9e-68 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.004G126600 [exp] 91 / 1e-22 AT3G28917 129 / 5e-40 mini zinc finger 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04770 [flax] [poplar] ZF-HD_dimer ZF-HD protein dimerisation region
Representative CDS sequence Show only first row Show all	>Lus10010694 pacid=23141674 polypeptide=Lus10010694 locus=Lus10010694.g ID=Lus10010694.BGIv1.0 annot-version=v1.0 ATGGAATTAACCAGTCATCATCATCATCATGTTCATGAGGAAGAGGAGGATCACATGGCAATTCCAGTAAACTCTTCCTATGCAGGAGGAGGCCTAAACC ACTTGATCCACAATCCTCATCCTCCTCTGTCTCCTTCTACTGTTACACCCGCAACTTCTTCTGCACCATTATCTCTCCCCAACAATAATAACAATAATGG ATCTGGAAGTCAACACCATCACCATATCAACAACAACAGCAAGAGAAGGTCTTCTTCAGTGATCAGATACAGGGAATGCCTGAAGAATCACGCGGCATCA ATGGGAGGAAACGCTACAGACGGATGTGGGGAGTTCATGCCCAGCGGAGAAGAAGGCACCATCGAAGCACTCACTTGCTCCGCCTGCAACTGCCACCGCA ACTTCCACCGCAAACAAACCATCCTCCACCACCACCCGCATCCTCATAATCACCACCACAATCCCCTCCTGCTACAACAAGTACCACTTCATCAACATCA TCAAGCTCCACCGCCATTGGTGGTCCCCCACCACCACCACCACCACATGCTCATGTCATACAACATGGCTGCTGCTGCTGCTGCTGGATCACTGCTGCCC TCTGAATCCGACAACCACAACAACGATGCTGAAGATCATCACCAGCATGAGTACCATAACAACAACAAGCAGCAGCAAGGGATGAATACGAAGAGGCACA GGACAAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCTTGCTTTTGCTGAGAGTGTTGGTTGGAAGCTACAGAAACAAGAGGAGAGCGTGGTCCAACAATT CTGCCACGAGATTGGTGTTAACCGTCGTGTGCTTAAGGTCTGGATGCACAATAACAAGCACACTTACCAACATCATCATCATCAAAACGCTGTCGTATCT CGTCCTCCAGTGCTTCATCCATCCACCACCACCACTGCTCCACTCCCGGCTTCTTCTTAA
AA sequence Show only first row Show all	>Lus10010694 pacid=23141674 polypeptide=Lus10010694 locus=Lus10010694.g ID=Lus10010694.BGIv1.0 annot-version=v1.0 MELTSHHHHHVHEEEEDHMAIPVNSSYAGGGLNHLIHNPHPPLSPSTVTPATSSAPLSLPNNNNNNGSGSQHHHHINNNSKRRSSSVIRYRECLKNHAAS MGGNATDGCGEFMPSGEEGTIEALTCSACNCHRNFHRKQTILHHHPHPHNHHHNPLLLQQVPLHQHHQAPPPLVVPHHHHHHMLMSYNMAAAAAAGSLLP SESDNHNNDAEDHHQHEYHNNNKQQQGMNTKRHRTKFSQEQKEKMLAFAESVGWKLQKQEESVVQQFCHEIGVNRRVLKVWMHNNKHTYQHHHHQNAVVS RPPVLHPSTTTTAPLPASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010694 [exp]	0	1
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010693 [exp]	1.0	0.9950
AT1G31310	Trihelix		hydroxyproline-rich glycoprote...		Lus10040629 [exp]	1.4	0.9922
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10040522 [exp]	4.5	0.9862
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10043211 [exp]	5.5	0.9911
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10018717 [exp]	5.9	0.9895
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014528 [exp]	6.0	0.9903
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10013874 [exp]	9.2	0.9855
					Lus10026293 [exp]	9.5	0.9878
AT2G42560			late embryogenesis abundant do...		Lus10002197 [exp]	9.9	0.9861
AT2G18350	ZF_HD	ATHB24, ZHD6	ZINC FINGER HOMEODOMAIN 6, hom...		Lus10007147 [exp]	10.0	0.9796

Compare expression of checked genes

Lus10010694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.