Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28050 258 / 6e-84 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40240 238 / 4e-76 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G40230 231 / 2e-73 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G15540 221 / 1e-69 EamA-like transporter family (.1) AT5G40210 214 / 3e-67 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G70260 186 / 1e-55 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 183 / 6e-55 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G28100 178 / 4e-53 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 178 / 1e-52 WAT1 Walls Are Thin 1 (.1.2) AT3G28130 172 / 1e-50 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029180 [exp] 474 / 1e-169 AT3G28050 220 / 2e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039425 [exp] 262 / 3e-85 AT3G28050 453 / 4e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039479 [exp] 255 / 2e-82 AT3G28050 457 / 1e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10034877 [exp] 226 / 7e-72 AT5G40230 207 / 3e-64 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039428 [exp] 225 / 2e-71 AT3G28050 343 / 2e-117 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039481 [exp] 225 / 4e-71 AT5G40240 265 / 2e-86 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10039478 [exp] 219 / 1e-68 AT3G28050 385 / 2e-133 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039429 [exp] 210 / 3e-64 AT3G28050 354 / 6e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10030842 [exp] 197 / 2e-60 AT3G28050 244 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G145800 [exp] 439 / 2e-155 AT3G28050 283 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032100 [exp] 369 / 2e-127 AT3G28050 224 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192900 [exp] 344 / 9e-118 AT3G28050 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G073200 [exp] 283 / 1e-93 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.001G337100 [exp] 272 / 2e-89 AT3G28050 367 / 4e-126 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G453000 [exp] 191 / 9e-58 AT3G30340 369 / 4e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 189 / 7e-57 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.010G096100 [exp] 188 / 7e-57 AT1G70260 415 / 4e-145 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 188 / 1e-56 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G042900 [exp] 187 / 3e-56 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10010695 pacid=23148732 polypeptide=Lus10010695 locus=Lus10010695.g ID=Lus10010695.BGIv1.0 annot-version=v1.0 ATGAAGGTTGCAGGTCCATTTGTAGGTATGATAATGGTGGAGTGTGCCCAAGTTGGGCTAATGATCGTCAGCAAACAAGTGATGTCACAAGGGATGAGCA GCTTCATCTTCGTCCTCTACTCCAACGCCCTCGCCTCCTTAGTCCTCCTCCCTTCATCTCTATTCCTCCACAGGTCAGGGAGGCCTCCACTTACCTTCCC AATTCTCTGCGGATTCTTCGTCATGGGTCTCTTTGGATTTCTGGCGCAGGCTTTTGGATATGCTGGGATTAACCTGAGTTCTCCTACGCTAGCCACGGCA TTGCTAAACCTTATCCCTGGATTCACCTTTGTTCTTGCTGTTACTTTCAGGATGGAAAAGCTTGATTGGAGAACCTCTAGTACCATAGCTAAAGCTGTAG GCACTGTTGTATCAATGACTGGTGCATTCATCATGACATGTTACAACGGCCCTCCTTTGATACATTCCTCGTCGAAACAAGTCCTCTTACAGTCGAATTG GGTCCTTGGAGGGTCGTTTCTTGCTGTGGACTGTGTTATGGCTTCTTTCTTTGTTATCATACAGGCATTGATCCTGAGGAAGTATCCAGCAGAGCTGATC ATTGTATTCTTCTACTGCTTCTTTGTTGCCATACTGTCCACAGTAGTTTGTTTGGTAATGGAAAGAGACTTTGATGCTTGGAGCCTGAAACCTAGTATAA GGTGGATGAGTGTCCTGTATTCAGGAATTTTCGGATCTGCCTTCCAAGTTAGTGTTATTGTATGGTGTCTGCACAGGACAGGGCCGGTTTTCGTGTCGAT GTTCAAGCCCATCGGTATCGTGATTGCAGCTTCGGTTGGTGTCATCTGTTTCGGGGACACTCTGTACCTTGGAAGTTTGATTGGAGCAGGTTTCATTGTG GTTGGATTCTATTTGGTGATATGGGGGAAAGCTAAAGAAGCAGATCATGTAGATGTTAATGTTGCAAAAGCTGAGTCAAGCAGTGAAAAGGCTCCTCTCC TGCCAAGTTACTTGGAATAA
AA sequence Show only first row Show all	>Lus10010695 pacid=23148732 polypeptide=Lus10010695 locus=Lus10010695.g ID=Lus10010695.BGIv1.0 annot-version=v1.0 MKVAGPFVGMIMVECAQVGLMIVSKQVMSQGMSSFIFVLYSNALASLVLLPSSLFLHRSGRPPLTFPILCGFFVMGLFGFLAQAFGYAGINLSSPTLATA LLNLIPGFTFVLAVTFRMEKLDWRTSSTIAKAVGTVVSMTGAFIMTCYNGPPLIHSSSKQVLLQSNWVLGGSFLAVDCVMASFFVIIQALILRKYPAELI IVFFYCFFVAILSTVVCLVMERDFDAWSLKPSIRWMSVLYSGIFGSAFQVSVIVWCLHRTGPVFVSMFKPIGIVIAASVGVICFGDTLYLGSLIGAGFIV VGFYLVIWGKAKEADHVDVNVAKAESSSEKAPLLPSYLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10010695 [exp]	0	1
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	2.2	0.9623
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040764 [exp]	2.4	0.9565
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10002484 [exp]	4.0	0.9524
					Lus10001241 [exp]	4.6	0.9336
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10016461 [exp]	5.7	0.9536
AT2G38370			Plant protein of unknown funct...		Lus10009099 [exp]	7.5	0.9438
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10028340 [exp]	7.7	0.9472
					Lus10033269 [exp]	11.2	0.9469
AT5G57850			D-aminoacid aminotransferase-l...		Lus10011382 [exp]	12.7	0.9330
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10040945 [exp]	13.2	0.9479

Compare expression of checked genes

Lus10010695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.