Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70260 328 / 5e-110 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G60050 303 / 2e-100 Nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40230 148 / 8e-41 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28050 145 / 7e-40 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40240 145 / 1e-39 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G15540 133 / 3e-35 EamA-like transporter family (.1) AT4G30420 124 / 1e-31 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 121 / 9e-31 WAT1 Walls Are Thin 1 (.1.2) AT5G40210 120 / 1e-30 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 119 / 4e-30 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039481 [exp] 175 / 4e-51 AT5G40240 265 / 2e-86 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10039425 [exp] 164 / 2e-46 AT3G28050 453 / 4e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039479 [exp] 159 / 9e-45 AT3G28050 457 / 1e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10010695 [exp] 154 / 5e-43 AT3G28050 280 / 3e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10034877 [exp] 146 / 2e-40 AT5G40230 207 / 3e-64 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039428 [exp] 146 / 3e-40 AT3G28050 343 / 2e-117 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039478 [exp] 144 / 4e-39 AT3G28050 385 / 2e-133 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10030168 [exp] 125 / 4e-32 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 123 / 1e-31 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096100 [exp] 392 / 2e-135 AT1G70260 415 / 4e-145 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G073200 [exp] 214 / 6e-66 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.001G032100 [exp] 167 / 4e-48 AT3G28050 224 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G337100 [exp] 154 / 3e-43 AT3G28050 367 / 4e-126 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G145800 [exp] 152 / 2e-42 AT3G28050 283 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G042900 [exp] 135 / 6e-36 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G040200 [exp] 134 / 1e-35 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 132 / 1e-34 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.008G165600 [exp] 130 / 5e-34 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192900 [exp] 129 / 1e-33 AT3G28050 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10010696 pacid=23148710 polypeptide=Lus10010696 locus=Lus10010696.g ID=Lus10010696.BGIv1.0 annot-version=v1.0 ATGAGAGATCAGGCGCCGGCGGCAGAATATTCCAATAAGGTTAGGTCATCGTTGGTAGAGAGTGTGGTGCCGTTTGTAGGGATGGTTGGGATGGAAGGAT GCACCATTGCACTTACTATCATGACTAAAACCGTGCTTTCGTCACCTTCTGGTGGCATGGTTAAGTCTTATAATTATCGGGGGTTTTCGACCACGATGAC AACGACCACCACGAGCCCTTTGGTGTTCGTCGTGTACACGAATGTTCTCGGGACCCTGTTTCTGTTCCCCTTTTCCTTCTTTTACCACAGATCGTCCGGT GGGAATGATGGTGGTGGCGACGACGAGAAGCAGAATCAGCGAAGTCGGCCCGAGTTGGGTCTGGTTCTGCGGTATTTCTTCATGGGTTTTACCGGGATAA CAATGGCCCAAAATCTAGCATTCATGGGCCTAGCCTACAGCTCGCCAATCGTCGTCTGCGCAATGGGCCTACTGACCCCAGCCTTCTCATTCATCCTTGA AATCCTCCTCAGAACAGCCAAAAACGTTGACTGGTCAAACTCAACCTTCAGGTTTAAGCTGATGGGAACCTTAGTCTCAGCCATGGGTGCAGTAACAGTA CAACTCTACAAAGGACCCTACATAAGAGAAGCTTCAGCATCACACCTCCAGTCGAAACAGCACCGTTTCATCTTCTACTCGTTGGCCGACGACAGCTGGA CCCTAGGTTGCCTTCTCCTTGCTGCTGCTTCACTCTGTGTCTCCGTTTGGAACTCCATACAGATGGACACTGTGAAACGAAATTCACAAGTGATGAAGGT AGCATCGTACTATAGCTTAGCAGGGACGGTTCAGTGTGCAATATTTGCTGCTGTTGTGGAAAGAGACATCAATGCTTGGAAGTTGAATCTTCGTAGCTTG GAATTTCTCGTTATTTTTCTCGCGGCGATCTTTGGAAGTGTAATTCGAAGCAGTGCTCACATGTGGAGTGCAAGGGCAAAAGGCGGTCTATATGTAGCCA TGTTCCAGCCATTTAGAATCGTCTGGGCCACTTTTTTCGGTGTCAGCTTCTTTGTGAACGGTTTGCATTATGGGAGTGTGATCGGGACGGTTGTATGTGG GATAGGATATTACACGACAATATGGGGTAAGATCAAAGAGGAAGAAGAGCGACGAAATGGGCATAGTCAAAGTAATAAGGCTCCGTTGCTCATCAAGGAT GATTCACAAGTTTAA
AA sequence Show only first row Show all	>Lus10010696 pacid=23148710 polypeptide=Lus10010696 locus=Lus10010696.g ID=Lus10010696.BGIv1.0 annot-version=v1.0 MRDQAPAAEYSNKVRSSLVESVVPFVGMVGMEGCTIALTIMTKTVLSSPSGGMVKSYNYRGFSTTMTTTTTSPLVFVVYTNVLGTLFLFPFSFFYHRSSG GNDGGGDDEKQNQRSRPELGLVLRYFFMGFTGITMAQNLAFMGLAYSSPIVVCAMGLLTPAFSFILEILLRTAKNVDWSNSTFRFKLMGTLVSAMGAVTV QLYKGPYIREASASHLQSKQHRFIFYSLADDSWTLGCLLLAAASLCVSVWNSIQMDTVKRNSQVMKVASYYSLAGTVQCAIFAAVVERDINAWKLNLRSL EFLVIFLAAIFGSVIRSSAHMWSARAKGGLYVAMFQPFRIVWATFFGVSFFVNGLHYGSVIGTVVCGIGYYTTIWGKIKEEEERRNGHSQSNKAPLLIKD DSQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70260			nodulin MtN21 /EamA-like trans...		Lus10010696 [exp]	0	1
AT3G17940			Galactose mutarotase-like supe...		Lus10026181 [exp]	2.0	0.7957
AT3G28580			P-loop containing nucleoside t...		Lus10004258 [exp]	4.4	0.7515
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10029126 [exp]	4.5	0.8412
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10015993 [exp]	10.3	0.7974
AT2G15220			Plant basic secretory protein ...		Lus10013868 [exp]	15.9	0.7263
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10013692 [exp]	16.0	0.7965
AT3G49220			Plant invertase/pectin methyle...		Lus10022412 [exp]	16.7	0.7847
AT3G03430			Calcium-binding EF-hand family...		Lus10033587 [exp]	18.7	0.7908
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017653 [exp]	22.3	0.7900
AT3G23940			dehydratase family (.1.2)		Lus10043132 [exp]	24.5	0.7657

Compare expression of checked genes

Lus10010696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.