Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24020 79 / 5e-19 MLP423 MLP-like protein 423 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029185 [exp] 341 / 7e-122 AT1G24020 80 / 2e-19 MLP-like protein 423 (.1.2) Lus10029183 [exp] 233 / 2e-78 AT1G24020 73 / 6e-16 MLP-like protein 423 (.1.2) Lus10010700 [exp] 221 / 2e-74 AT1G24020 74 / 4e-17 MLP-like protein 423 (.1.2) Lus10001042 [exp] 119 / 1e-34 AT1G24020 69 / 5e-15 MLP-like protein 423 (.1.2) Lus10000474 [exp] 116 / 3e-33 AT1G24020 64 / 2e-13 MLP-like protein 423 (.1.2) Lus10001041 [exp] 114 / 9e-33 AT1G24020 64 / 2e-13 MLP-like protein 423 (.1.2) Lus10003451 [exp] 106 / 2e-29 AT1G24020 73 / 7e-17 MLP-like protein 423 (.1.2) Lus10029182 [exp] 106 / 2e-27 AT1G24020 88 / 1e-20 MLP-like protein 423 (.1.2) Lus10010698 [exp] 105 / 7e-27 AT1G24020 94 / 2e-22 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096000 [exp] 91 / 1e-23 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2) Potri.013G131000 [exp] 47 / 8e-07 AT1G24020 62 / 1e-12 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10010701 pacid=23148748 polypeptide=Lus10010701 locus=Lus10010701.g ID=Lus10010701.BGIv1.0 annot-version=v1.0 ATGTCGCCGTCGTCAGCATCAGCAGGCCGTAACGTGGCCGATCTCAGAATGACTTCGTCGGCCAACGACGTCTGGGGGGCCATCTTCGCATCCACCACCG TCTTCCCGGAGTTCCTGCCGAAGCTCTACAAAGAAATCAGATCCACCAAGGGCGACGGCTACTCTCAGGACTCCATGCGAGAGATCACTTATGGCTATGA CTCAGGTTTTGGAGAAGCCGTGGAGTCGTCGATCGAGGAGATTAAAAAGGTGGACCACGGAAAGATGACCGTGAGCTATTCAGTCACTCACGGTGGGTTC CTCGATCATCATGATACATTCGATACCACCATAAAGGTGACTCCCACGGACGGTAGTAGCCCGAGGGAGCTCGGGTGCATTGCTTCGTGGAGCTGTGACT ACACCGGTGCAACGGGTGGTTTGAGCCCGGAGATGGTTAAGGCGTTTATGCTCAAGACCTTCGAGGGCTTGGACAGCCACCTCAAGAATCTAAGGAAGAC CTATAAGAGTCCACAATGA
AA sequence Show only first row Show all	>Lus10010701 pacid=23148748 polypeptide=Lus10010701 locus=Lus10010701.g ID=Lus10010701.BGIv1.0 annot-version=v1.0 MSPSSASAGRNVADLRMTSSANDVWGAIFASTTVFPEFLPKLYKEIRSTKGDGYSQDSMREITYGYDSGFGEAVESSIEEIKKVDHGKMTVSYSVTHGGF LDHHDTFDTTIKVTPTDGSSPRELGCIASWSCDYTGATGGLSPEMVKAFMLKTFEGLDSHLKNLRKTYKSPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010701 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10019234 [exp]	12.7	0.8214
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10019926 [exp]	12.8	0.8570
					Lus10039764 [exp]	15.5	0.8073
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10033519 [exp]	16.1	0.7891
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10026496 [exp]	16.7	0.8346
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10001394 [exp]	17.8	0.8531
AT5G62480		GST14B, ATGSTU9	GLUTATHIONE S-TRANSFERASE 14B,...		Lus10023595 [exp]	18.7	0.7701
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10002934 [exp]	25.1	0.7813
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031735 [exp]	34.6	0.7371
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10012823 [exp]	35.7	0.7722

Compare expression of checked genes

Lus10010701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.