Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24020 79 / 6e-17 MLP423 MLP-like protein 423 (.1.2) AT1G23120 44 / 9e-05 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029186 [exp] 618 / 0 AT1G24020 78 / 2e-16 MLP-like protein 423 (.1.2) Lus10029184 [exp] 264 / 3e-79 AT1G24020 84 / 1e-18 MLP-like protein 423 (.1.2) Lus10029182 [exp] 206 / 2e-59 AT1G24020 88 / 1e-20 MLP-like protein 423 (.1.2) Lus10010698 [exp] 207 / 5e-59 AT1G24020 94 / 2e-22 MLP-like protein 423 (.1.2) Lus10010699 [exp] 96 / 1e-23 AT1G24020 56 / 7e-11 MLP-like protein 423 (.1.2) Lus10025503 [exp] 95 / 4e-20 ND / Lus10016109 [exp] 92 / 4e-19 ND / Lus10030840 [exp] 80 / 3e-17 AT1G24020 189 / 2e-62 MLP-like protein 423 (.1.2) Lus10010700 [exp] 80 / 4e-17 AT1G24020 74 / 4e-17 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096000 [exp] 76 / 4e-16 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2) Potri.004G032900 [exp] 51 / 2e-07 AT1G24020 59 / 2e-11 MLP-like protein 423 (.1.2) Potri.004G033000 [exp] 51 / 3e-07 AT1G24020 57 / 1e-10 MLP-like protein 423 (.1.2) Potri.010G000400 [exp] 47 / 5e-06 AT1G24020 66 / 4e-14 MLP-like protein 423 (.1.2) Potri.008G212100 [exp] 45 / 4e-05 AT1G24020 50 / 6e-08 MLP-like protein 423 (.1.2) Potri.008G212700 [exp] 44 / 5e-05 AT1G24020 68 / 8e-15 MLP-like protein 423 (.1.2) Potri.008G213446 [exp] 44 / 5e-05 AT1G24020 68 / 8e-15 MLP-like protein 423 (.1.2) Potri.008G213669 [exp] 44 / 5e-05 AT1G24020 68 / 8e-15 MLP-like protein 423 (.1.2) Potri.008G213223 [exp] 43 / 7e-05 AT1G24020 64 / 6e-14 MLP-like protein 423 (.1.2) Potri.010G000200 [exp] 44 / 0.0001 AT1G24020 65 / 1e-13 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family CL0066 [flax] [poplar] Trefoil PF07468 [flax] [poplar] Agglutinin Agglutinin domain
Representative CDS sequence Show only first row Show all	>Lus10010702 pacid=23148721 polypeptide=Lus10010702 locus=Lus10010702.g ID=Lus10010702.BGIv1.0 annot-version=v1.0 ATGTCCATCAAGAAACAGGTGCTGCCCAAGTTTGCGGCGATCAAGTCGAGGTACAATCACAATTACCTGCGTTACAGAAATGAGAAAGGGGAGCAACATG GGTTCCTCCAGTTCTCGTTAGAAGACGATAAGGCAGCTGCGGTAGCGAACCAGTATGCCAAATTCGAAGTGAAGAAGGCGAAATCGGGGGATGGATTGGT GCATCTGAAATGCTGCTTCAATAACAAGTACTTGGTGAGGTCGGATTCTACCAAGTGGTGGATTCGTGCCGCGGCTGATGCTGTCGTGGAAGACGAGTCT AAATGGTCGTGTACGCTTTTCAAGCCTGTGTATGTGAACGATGATAGTGGTGTTAGGTTTCAGCATGTTCAGCTTCGACATTTCCTTTGTTTGTTTAGGA GCGGTCCGCCGTTCGGGGAATGTTTGTATGCCGGATGGAAGGATCCCAATCAAGATTTGTGTGATGTGTTTTCAGTCATTGATTGGGAAAAGGAACAAGA TGATGGTAGTGAAGGAGATCCAGCTATCTCGGAGGAAGAAGAAGAACCAGTTAAGATCCCACCGAGAAGGCGTCCTGGTGATCGTTTCGGCAGTCTTTCG CCGGAAAGGCGTGGAGGTCGAAACAACGCCGATAAACAAATGAGTGATAATGAGTACTACATTCATCCTCGAGGTCAACCGGCTCATCCGGCTGGTGATC GTCGCAGGAGTCATTCGCCGACAAGGCATCAAGCTGGTAGGAAGATCAATCGTGATGATGAATACGAGATTCCTCCGCGACATACTCGACGGCCTAATGA TCATCGCAGCAGCCATTCGCCAAGAAGGAATCAAGCTGGTAGGAAGAACAACCATGAAGATGAATACGACATTCCTCCACGAAATCCTCCCGCTCAATCA GAAGGGGATAGTCGCAGTAGTCGCTCGCCGAAAAGGCATCAAGCTGGCAGGAAGTTGAACCGTGATGATGAATACGACATTCATCCACAAAATCCTCCGG CTCGATCGTATGGGGATCGTCGCAGTAGTTATTCACCGAAAAGGCATCAACCTGGCAGGAAGATCAACCGTGATGATGAATACAACATTCCTCCTCCACG ACATACTCGACCAGCTGGTGATCGTCGCAGTAATCATTCGCCAATAAGGCATGACTACGGAAAGATGAACAATCGTGATGATGAAGACTACGCTCCTCCA CGACATGCCCAACGGCCTGATGACCGTCCCAGCAGCTCAAAAGGCATCAACCTGGCGGGAGGATCAACCGTGATGATGAATACAACATTCCTCCTCCACG ACATACTCGACCAGCTGGTGATCGTCGCAGTAGTCATTCGCCGAAAAGGCATGACTACGGAAAAAGGAACAATCGTGATGATGAAGACTTCGCTCCTCCA CGACATGGCCAGCGGCCTGATGACCGTCCCAGTAGCTCACATGACGATGGAAAGAAGATCAATAGTGACAGTGAAGCTTACAATCGAGGCAAACATGGAG AACAGACAGATCGTAAGAATGAAAACTACACTCCTCCTCGGCAGACTGGTGGGCGTGCTAGCAGTCTTTCGCCGCAAAGGCGTGGAGATCGAAACACGAC CAATCAGACCAATAGTGATAACGAAAACTACACTCATGGAGGGCACCAATCGGCACCGGATGCCAAGGGTAAAGGCAGTGTACCCCACCAGTACGAAATC CCCAAGCGAGAAGCTGAAAAGGAAGAAAGATACGTTCTGGGGAGCAGTCTTTGTGTCCACAAAACTACTGCCGAAAGCATTGCCACAAGTGTACAAAGCT ATCAAAGTGATTAGCCCTGATGGGTTCAGCGAAGGCTCAATCCGCGAGATTAGCTTCACTCAAGGTGAGTTTGAGAAGTTGAAGGAGAAGGTAGTGTATG TGGATCACCAAACGAAGAAGATAACATGGTCTCTTCTGGAAGGAGGAATGCTGAGCTACTATGAGAGGTTCAAGATCACTATATCGGTCACTCCAAAGAA GCGTCACGACAGGGGATGCAGAGTGAATTGGAGCTACGTTGGTACCAATCCAAAGAAGAAGTTTGATAAGGACGGCTTCAAGAAGTTGTTTCAGGATACC TTCGAAGCTGTCGATGATTATCTCGAGAGCAATGCTGCTAGAGATACCAATTAG
AA sequence Show only first row Show all	>Lus10010702 pacid=23148721 polypeptide=Lus10010702 locus=Lus10010702.g ID=Lus10010702.BGIv1.0 annot-version=v1.0 MSIKKQVLPKFAAIKSRYNHNYLRYRNEKGEQHGFLQFSLEDDKAAAVANQYAKFEVKKAKSGDGLVHLKCCFNNKYLVRSDSTKWWIRAAADAVVEDES KWSCTLFKPVYVNDDSGVRFQHVQLRHFLCLFRSGPPFGECLYAGWKDPNQDLCDVFSVIDWEKEQDDGSEGDPAISEEEEEPVKIPPRRRPGDRFGSLS PERRGGRNNADKQMSDNEYYIHPRGQPAHPAGDRRRSHSPTRHQAGRKINRDDEYEIPPRHTRRPNDHRSSHSPRRNQAGRKNNHEDEYDIPPRNPPAQS EGDSRSSRSPKRHQAGRKLNRDDEYDIHPQNPPARSYGDRRSSYSPKRHQPGRKINRDDEYNIPPPRHTRPAGDRRSNHSPIRHDYGKMNNRDDEDYAPP RHAQRPDDRPSSSKGINLAGGSTVMMNTTFLLHDILDQLVIVAVVIRRKGMTTEKGTIVMMKTSLLHDMASGLMTVPVAHMTMERRSIVTVKLTIEANME NRQIVRMKTTLLLGRLVGVLAVFRRKGVEIETRPIRPIVITKTTLMEGTNRHRMPRVKAVYPTSTKSPSEKLKRKKDTFWGAVFVSTKLLPKALPQVYKA IKVISPDGFSEGSIREISFTQGEFEKLKEKVVYVDHQTKKITWSLLEGGMLSYYERFKITISVTPKKRHDRGCRVNWSYVGTNPKKKFDKDGFKKLFQDT FEAVDDYLESNAARDTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010702 [exp]	0	1
AT1G24560			unknown protein		Lus10013022 [exp]	15.2	0.8454
AT5G47550			Cystatin/monellin superfamily ...		Lus10010495 [exp]	21.5	0.8247
AT2G37710		RLK	receptor lectin kinase (.1)		Lus10035627 [exp]	44.7	0.7745
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026329 [exp]	51.2	0.7617
AT5G19740			Peptidase M28 family protein (...		Lus10011133 [exp]	51.2	0.7652
					Lus10029181 [exp]	57.0	0.7531
AT2G30990			Protein of unknown function (D...		Lus10033602 [exp]	63.0	0.7746
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10033061 [exp]	67.9	0.7731
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Lus10014133 [exp]	78.7	0.7548
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10002861 [exp]	92.6	0.7523

Compare expression of checked genes

Lus10010702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.