Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24030 578 / 0 Protein kinase superfamily protein (.1.2) AT1G20650 283 / 6e-93 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT5G18610 280 / 3e-90 Protein kinase superfamily protein (.1.2) AT5G13160 278 / 5e-90 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G02800 275 / 8e-90 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G20530 274 / 3e-89 Protein kinase superfamily protein (.1) AT3G24550 278 / 9e-88 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G07870 271 / 9e-88 Protein kinase superfamily protein (.1.2) AT1G76370 269 / 1e-87 Protein kinase superfamily protein (.1) AT3G24790 264 / 9e-86 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029187 [exp] 751 / 0 AT1G24030 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 291 / 6e-95 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10011148 [exp] 285 / 8e-94 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1) Lus10043050 [exp] 283 / 1e-92 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1) Lus10040050 [exp] 281 / 3e-92 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10019621 [exp] 278 / 4e-91 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1) Lus10033966 [exp] 282 / 6e-91 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 281 / 8e-91 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019897 [exp] 273 / 4e-89 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G095900 [exp] 637 / 0 AT1G24030 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G145900 [exp] 627 / 0 AT1G24030 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 289 / 2e-94 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 285 / 9e-94 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 287 / 1e-93 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 286 / 1e-92 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.011G137000 [exp] 282 / 1e-92 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 281 / 2e-92 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 281 / 1e-90 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G133300 [exp] 276 / 7e-90 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10010703 pacid=23148735 polypeptide=Lus10010703 locus=Lus10010703.g ID=Lus10010703.BGIv1.0 annot-version=v1.0 ATGCCTTTTGGGTTGGTTTCTGCTTGGAACAAGAGGAGGAGAAGCAAGTCTCAGGATCATAGTGATCCCTGGGAATATAGGCCGGTGGAGTACTGGAAGC TGGAAGAGCAACCTCCGAAACCCACCACGAAGAGGCGATATGGATCGTCAGTGTTCACTCTAAAGGAAATGGAGGAGGCTACTTGCTTGTTTGGTGAAGA GAATTTTCTAGGGAAAGGAGGGTTTGGCAGAGTTTACAAAGGCACTCTACGGTCTGGAGAGGTGGTAGCAGTTAAGAAGATGGAGTTACCTTCGTTTAAA GCAGCAGAAGGGGAAAGAGAGTTCCGGGTTGAAGTCGATATCTTGAGCAGGCTGGACCATCCGAATTTGGTGTCCTTGATAGGGTATTGTGCTGATGGGA AGGAGAGGTTTCTGGTGTATGAGTACCTCCCAAATGGAAACCTTCAAGATCACCTCAATGGAATCGGGGAAGCGAAGATGGACTGGTCACAAAGACTGAA AGTGGCAATTGGAGCAGCAAGAGGACTTGCTTATCTACATTCGTCTTCTGCTGTTGGGATACCAATTGTTCATAGAGACTTCAAATCCACTAATGTGCTT CTCAGTGCCAATTTTGAAGCCAAGATTTCTGATTTTGGATTGGCTAAGTTAATGCCAGAAGGACAAGAGACATATGTGACTGCTATGGTTCTTGGTACAT TTGGCTATTTCGACCCCGAGTATACATCGGTAGGAAAGCTCACTCTACAAAGCGATGTTTATGCATTCGGAGTGGTTCTTCTTGAGCTGCTAACCGGTCG GAGAGCCGTTGACCTAAACCAGGGACCAACCGACCAAAACCTTGTCCTGCAAGTTAGACACATACTCAACGACCGAAAGAAGCTGAGAAGGGTGATCGAT CCAGATATGAGCCGGAGCTCTTATTCGATGGAATCTGTAGCCATGTTTGCGAATTTGGCATCACGATGCGTCCGCGCAGAAAGCAACGAGAGACCTTCCA TGGCTGAATGTGTGAAAGAACTCCAAGTGATCATCTACACAAATTCAAAAGGACTGAGCAGCATTGGATTTGGAGGCAACTCTTTCAAAATTCTCTCATA A
AA sequence Show only first row Show all	>Lus10010703 pacid=23148735 polypeptide=Lus10010703 locus=Lus10010703.g ID=Lus10010703.BGIv1.0 annot-version=v1.0 MPFGLVSAWNKRRRSKSQDHSDPWEYRPVEYWKLEEQPPKPTTKRRYGSSVFTLKEMEEATCLFGEENFLGKGGFGRVYKGTLRSGEVVAVKKMELPSFK AAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKERFLVYEYLPNGNLQDHLNGIGEAKMDWSQRLKVAIGAARGLAYLHSSSAVGIPIVHRDFKSTNVL LSANFEAKISDFGLAKLMPEGQETYVTAMVLGTFGYFDPEYTSVGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPTDQNLVLQVRHILNDRKKLRRVID PDMSRSSYSMESVAMFANLASRCVRAESNERPSMAECVKELQVIIYTNSKGLSSIGFGGNSFKILS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24030			Protein kinase superfamily pro...		Lus10010703 [exp]	0	1
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10016872 [exp]	1.0	0.9793
AT1G24030			Protein kinase superfamily pro...		Lus10029187 [exp]	1.4	0.9760
AT5G26330			Cupredoxin superfamily protein...		Lus10041211 [exp]	3.5	0.9651
AT3G15480			Protein of unknown function (D...		Lus10043091 [exp]	4.7	0.9550
AT5G14940			Major facilitator superfamily ...		Lus10032177 [exp]	6.2	0.9536
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10037737 [exp]	7.3	0.9675
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10032728 [exp]	10.0	0.9552
AT2G47010			unknown protein		Lus10007453 [exp]	10.1	0.9615
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10041653 [exp]	12.5	0.9456
AT2G35860		FLA16	FASCICLIN-like arabinogalactan...		Lus10021247 [exp]	13.0	0.9453

Compare expression of checked genes

Lus10010703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.