Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70230 460 / 1e-160 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) AT1G01430 302 / 2e-98 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1) AT5G15890 298 / 6e-96 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 (.1) AT4G01080 292 / 2e-94 TBL26 TRICHOME BIREFRINGENCE-LIKE 26 (.1) AT5G15900 284 / 2e-91 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT4G11090 279 / 1e-89 TBL23 TRICHOME BIREFRINGENCE-LIKE 23 (.1) AT4G23790 278 / 3e-89 TBL24 TRICHOME BIREFRINGENCE-LIKE 24 (.1) AT3G28150 272 / 5e-87 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) AT4G25360 224 / 2e-67 TBL18 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2) AT5G51640 223 / 3e-67 TBL17, YLS7 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029188 [exp] 887 / 0 AT1G70230 461 / 5e-161 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Lus10029454 [exp] 327 / 2e-108 AT1G01430 488 / 2e-171 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10005952 [exp] 321 / 8e-107 AT1G01430 464 / 5e-163 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10034087 [exp] 304 / 3e-99 AT5G15890 490 / 1e-172 TRICHOME BIREFRINGENCE-LIKE 21 (.1) Lus10003061 [exp] 300 / 6e-98 AT5G15900 488 / 5e-172 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10032367 [exp] 288 / 2e-92 AT4G11090 521 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10033950 [exp] 284 / 6e-91 AT4G11090 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10024167 [exp] 268 / 2e-85 AT5G15900 381 / 3e-130 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10039438 [exp] 251 / 7e-79 AT3G28150 431 / 8e-150 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G146100 [exp] 587 / 0 AT1G70230 494 / 2e-174 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Potri.010G095700 [exp] 569 / 0 AT1G70230 481 / 2e-169 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Potri.002G168400 [exp] 318 / 1e-104 AT1G01430 495 / 4e-174 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.014G095800 [exp] 315 / 2e-103 AT1G01430 498 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.004G105700 [exp] 315 / 2e-103 AT5G15900 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.003G137800 [exp] 305 / 4e-99 AT4G11090 500 / 4e-176 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.001G093800 [exp] 301 / 5e-98 AT4G11090 516 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.004G105600 [exp] 291 / 2e-94 AT5G15900 411 / 5e-142 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.004G105500 [exp] 290 / 9e-94 AT5G15900 398 / 1e-136 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.017G073700 [exp] 287 / 6e-93 AT3G28150 442 / 3e-154 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10010704 pacid=23148712 polypeptide=Lus10010704 locus=Lus10010704.g ID=Lus10010704.BGIv1.0 annot-version=v1.0 ATGCCGGAAAAGCACAAGCTCGACGACCACAGAAAAACACCACTGCCTGCTTACAGCTATGGAATTTCCACCAACAACAAAGACCATCATCATCATCATC CATCTTCTTCCTTCACCAGAAAGCTCCTCCAATGGACCTTCTACTTAATCTTACCCTTCATCGTCTTCCGCCTCTACTTCTACCCTTACCCTCTTCACCA ATCTCCCGATTCCCTCCCCCTCATCGGTAAAGATCCATCCTTTTCAGAAGCTGGAAGAATTGAAGAACAGGAGGAAAGTCGTTCCCCTGCATGCGACTAC ACCGTTGGAAAATGGGTACCGGACAAGACCGGACCTTTATACAACGGAACAACCTGCGGCACAATCAAATCCGGCCAGAATTGCATGAGCCACGGAAGGC CAGACATGGGGTTTCTCTACTGGAGATGGCAGCCTCAAAGTTGCAATCTTCCAAGGTTTGACCCAAAAGACTTCCTTCAATTGTACTCCAATAGCCACAT AGCTTTTGTCGGAGACTCCATGGCTAGAAACCAATTGGAATCACTTCTCTGTATGCTGTCCTCTGTCTCAAATCATGAACTTGTCTATACTAATGGAGAA GACAACAAGTTTAGAAGATGGCATTTTGGTGGTTCATACAATGTGACTGTTTCAATCTACTGGTCTCCTTTTTTAGTCAAAGGTGTGGAGAAGTCTAGAG ATGGTCCTGATCATAATGAACTCTATTTGGATCAGATTGATGAGAGGTGGGGGAAAGATTTGGGGGAGATTGACTTGGTTGTTCTTTCAATTGGTCACTG GTTCTTGCATCCAGCGGTTTACTTCCAAGGAGTTGGTGAGAATTTGAATGTGCTAGGTTGTCATTACTGTCCCGGTATGAACCACACCGAGATCGGATTC TACGATGTCTTAAGGAAGGCGATTCGGACCACGTTGAACTCCATCTCCTCCAGACGAGGAGATGAGGGGATCGATGTGGTTATGACGACATTTTCGCCAT CACATTTCGAAGGGGAGTGGGACAAGTTTGGGGCTTGTTCGAGGACGGAGCCGTATGGGGAAGGGGACAAAGTGCTGGAAGGGATGGATGCTGATATGAG GAAGATTGAGGTTGAGGAAGTTGAGTTAGCAAAGAGTGGTGGTAATGGGAAGAAGGTGAGATTCGAGGCGTTGGATGTGACGGAGTTGTCGTTGATGAGG TCGGATGGGCATCCGGGGGCTTACATGCATCCTTTCCCGTTTGCGAAGGGTGTTGGGGAGCATGTTCAGAATGATTGTGTGCATTGGTGCTTGCCTGGTC CTGTGGATACTTGGAATGAGATACTTCTTCAGGTTATGAAGAGGTTGAAGAACCAGTGA
AA sequence Show only first row Show all	>Lus10010704 pacid=23148712 polypeptide=Lus10010704 locus=Lus10010704.g ID=Lus10010704.BGIv1.0 annot-version=v1.0 MPEKHKLDDHRKTPLPAYSYGISTNNKDHHHHHPSSSFTRKLLQWTFYLILPFIVFRLYFYPYPLHQSPDSLPLIGKDPSFSEAGRIEEQEESRSPACDY TVGKWVPDKTGPLYNGTTCGTIKSGQNCMSHGRPDMGFLYWRWQPQSCNLPRFDPKDFLQLYSNSHIAFVGDSMARNQLESLLCMLSSVSNHELVYTNGE DNKFRRWHFGGSYNVTVSIYWSPFLVKGVEKSRDGPDHNELYLDQIDERWGKDLGEIDLVVLSIGHWFLHPAVYFQGVGENLNVLGCHYCPGMNHTEIGF YDVLRKAIRTTLNSISSRRGDEGIDVVMTTFSPSHFEGEWDKFGACSRTEPYGEGDKVLEGMDADMRKIEVEEVELAKSGGNGKKVRFEALDVTELSLMR SDGHPGAYMHPFPFAKGVGEHVQNDCVHWCLPGPVDTWNEILLQVMKRLKNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Lus10010704 [exp]	0	1
AT1G72180			Leucine-rich receptor-like pro...		Lus10003503 [exp]	2.2	0.9182
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10006369 [exp]	2.4	0.8918
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10003201 [exp]	6.8	0.8987
AT1G64980			Nucleotide-diphospho-sugar tra...		Lus10005005 [exp]	11.0	0.8406
AT5G08060			unknown protein		Lus10021149 [exp]	13.1	0.8814
AT4G09810			Nucleotide-sugar transporter f...		Lus10020837 [exp]	17.7	0.8263
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10032283 [exp]	20.7	0.8513
AT2G44600			unknown protein		Lus10019505 [exp]	21.0	0.8510
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Lus10008615 [exp]	21.5	0.8431
AT2G46490			unknown protein		Lus10019579 [exp]	21.5	0.7736

Compare expression of checked genes

Lus10010704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.