Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15510 382 / 2e-128 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G01015 329 / 1e-107 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G37478 74 / 2e-15 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G03780 63 / 3e-10 AtTPX2, TPX2 targeting protein for XKLP2 (.1.2.3) AT5G44270 47 / 1e-05 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029190 [exp] 623 / 0 AT5G15510 365 / 2e-121 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10030650 [exp] 444 / 6e-153 AT5G15510 404 / 4e-137 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10030836 [exp] 424 / 5e-145 AT3G01015 413 / 8e-141 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10020800 [exp] 77 / 3e-16 AT5G37478 148 / 1e-45 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10007382 [exp] 76 / 1e-15 AT5G37478 149 / 1e-45 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10018608 [exp] 61 / 1e-09 AT1G03780 741 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10017715 [exp] 60 / 3e-09 AT1G03780 687 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10039844 [exp] 57 / 4e-08 AT1G03780 689 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10033674 [exp] 45 / 0.0001 AT1G03780 718 / 0.0 targeting protein for XKLP2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G092100 [exp] 394 / 2e-132 AT5G15510 403 / 5e-136 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.004G118700 [exp] 383 / 4e-128 AT5G15510 410 / 8e-139 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.017G144061 [exp] 78 / 1e-16 AT5G37478 154 / 5e-48 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.017G013100 [exp] 64 / 1e-10 AT1G03780 667 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.007G138600 [exp] 55 / 1e-07 AT1G03780 672 / 0.0 targeting protein for XKLP2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [flax] [poplar] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Lus10010706 pacid=23148766 polypeptide=Lus10010706 locus=Lus10010706.g ID=Lus10010706.BGIv1.0 annot-version=v1.0 ATGGATTCAAGCATCAAGAAGAACCGGAAACCAACCACCACTCCCGCGAAGGAATCGCGATCGTCCCATGGATTCCAGTCGAAAGCTCAGAAATCTCCCG CCAAGGTATCGGAGAATGCAAATCCTAACCTCTCACGATCGATTTCCATGGTTGACTCCACTTCCTCTCCTCTGAACAAATCTGGCGGTAAGTGTAACAA GTCGGGACAGAAAATCCCCAATTCTACCAAAACCCTAGCTCCGTACTCGCCGAGGAACAAGCTCCAGCAGCGGAAGTTTGTGGTGGCGAAGAAGAAGAAG AATCCGAGCAAGGAAGAGGATAAGGCTTCTTCTTCTGATTCGGTTGCTAATCCGAACTGCAAGTGCAAGGGAGGGATTGGGAGCAAGTGCCTGTGTGTAG CGTACGAGAGTTTGAGGGCTTCGCAGGAGGAGTTCTTCAAAATCAGAAATGAAAGTGAGGAAATGGAAGAAGGAAATCGAGATGATCTGGAAGTTGAACA AGAGGAGCCGATATTGATGGATAGCGTTAGTAAAGTCCAGAGCGGCGGCGAGCAACAAGGAACGACGATGAAGAGAAGGAGGGAGAAGTTTCTAGAAGAT GTGAGGAACAGTGTTTCCAATGGTAGGAAAGTGATGCATTTGGTTAAAGCATTTGAGAAGCTTTTGACAGAACCTGAAGCGCTGAAGGACTGCGTTAAGG AGGAAAATGAAGTGGAGGAGGAGGAGGAGGAGAAATGTTATTCATTTTGTCCATCTGAAATGTTCTTGACTTCGGAGAATCTGGGTCTGGATTCGAACCT TTCTGTCTCTTCTTCGTGGGACGCCAGTCAGGGCAGTGTCGCCAGTAGGAAATCAAGTGGAGGGAGGAGAAGCAGACGAAACAGCTCTGAGTCATGTGCA ACAATGGGAGGGAGAAGATGGAAGAAGAAGCAGCAAAAGGTCACCAGTCTGAAGCCATTTAAGCTGAGGACTGAGCAAAGGGGGAAAACGAAGGAGGAGG AATTCATGAAGAAGATTCACGAAATGATGACAGAAGAGGAGAGGCAGCGGATTCCAATTGCTCAAGGTCTTCCATGGACAACTGATGAGCCCGAGCACCT TATCAAACCTCCCGTGAAGGAGATCACGAGACCAATCGATCTGATGCTTCACAGCGATATACGAGCAGAGGAGCGTGCGGAATTTGACCATCAGGTATCG GAGAAGCTAACTTTCATTGAGGAATACAAGATGGAAAGAGAGAGGCTGCAAAAGTTGGCGGAGGAGGAAGAAGTGCGGAGATTGAGAAAGGAACTCGTTC CGAAAGCACAGCCAATGCCCTACTTCGACAGACCCTTCATCCCTCGAAGGTCGATGAAGCAATCAACGGTTCCTAAAGAACCAAGGTTTCACGTACCTCA GCATAAGAAGATCAAGAGCTGCTCATCTTGGAGTGACTTGAGTACTTTCACTTTCCATCAATGA
AA sequence Show only first row Show all	>Lus10010706 pacid=23148766 polypeptide=Lus10010706 locus=Lus10010706.g ID=Lus10010706.BGIv1.0 annot-version=v1.0 MDSSIKKNRKPTTTPAKESRSSHGFQSKAQKSPAKVSENANPNLSRSISMVDSTSSPLNKSGGKCNKSGQKIPNSTKTLAPYSPRNKLQQRKFVVAKKKK NPSKEEDKASSSDSVANPNCKCKGGIGSKCLCVAYESLRASQEEFFKIRNESEEMEEGNRDDLEVEQEEPILMDSVSKVQSGGEQQGTTMKRRREKFLED VRNSVSNGRKVMHLVKAFEKLLTEPEALKDCVKEENEVEEEEEEKCYSFCPSEMFLTSENLGLDSNLSVSSSWDASQGSVASRKSSGGRRSRRNSSESCA TMGGRRWKKKQQKVTSLKPFKLRTEQRGKTKEEEFMKKIHEMMTEEERQRIPIAQGLPWTTDEPEHLIKPPVKEITRPIDLMLHSDIRAEERAEFDHQVS EKLTFIEEYKMERERLQKLAEEEEVRRLRKELVPKAQPMPYFDRPFIPRRSMKQSTVPKEPRFHVPQHKKIKSCSSWSDLSTFTFHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15510			TPX2 (targeting protein for Xk...		Lus10010706 [exp]	0	1
AT5G15510			TPX2 (targeting protein for Xk...		Lus10029190 [exp]	1.0	0.9748
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10006033 [exp]	2.8	0.9747
AT4G17000			unknown protein		Lus10010744 [exp]	3.5	0.9713
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041886 [exp]	6.5	0.9717
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Lus10002895 [exp]	6.5	0.9638
AT5G02370			ATP binding microtubule motor ...		Lus10024395 [exp]	6.9	0.9623
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041887 [exp]	7.7	0.9698
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10015684 [exp]	9.8	0.9686
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10020813 [exp]	11.0	0.9575
AT1G71680			Transmembrane amino acid trans...		Lus10036933 [exp]	12.4	0.9606

Compare expression of checked genes

Lus10010706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.