Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60010 147 / 2e-45 unknown protein AT1G10530 134 / 2e-40 unknown protein AT5G50090 124 / 3e-36 unknown protein AT5G62900 108 / 3e-30 unknown protein AT5G67620 93 / 4e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029193 [exp] 282 / 1e-98 AT1G60010 178 / 1e-57 unknown protein Lus10030651 [exp] 197 / 7e-65 AT1G60010 171 / 4e-55 unknown protein Lus10030835 [exp] 150 / 4e-47 AT1G60010 150 / 2e-47 unknown protein Lus10042139 [exp] 112 / 3e-31 AT5G50090 141 / 4e-43 unknown protein Lus10004229 [exp] 110 / 1e-30 AT5G50090 150 / 1e-46 unknown protein Lus10043461 [exp] 110 / 2e-30 AT5G50090 146 / 7e-45 unknown protein Lus10034124 [exp] 109 / 3e-30 AT5G50090 147 / 3e-45 unknown protein Lus10019264 [exp] 85 / 1e-20 AT5G67620 163 / 5e-51 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G095400 [exp] 180 / 4e-58 AT1G60010 187 / 5e-61 unknown protein Potri.008G146500 [exp] 174 / 4e-55 AT1G60010 189 / 3e-61 unknown protein Potri.015G072501 [exp] 147 / 4e-45 AT5G50090 152 / 4e-47 unknown protein Potri.012G077300 [exp] 147 / 5e-45 AT5G50090 168 / 1e-53 unknown protein Potri.007G005600 [exp] 99 / 4e-26 AT5G67620 184 / 7e-60 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010708 pacid=23148716 polypeptide=Lus10010708 locus=Lus10010708.g ID=Lus10010708.BGIv1.0 annot-version=v1.0 ATGGGGAATTGCCAAGCAATAGATGCAGCAGCTCTGGTGATACAGCATCCATGCGGAAAAATCGAGAGGATGTACTGGCAAGTCACCGCCAGCGAAATCA TGAGACTCAACCCCGGCCATTACGTCTCTCTCATCATCCCACTTGCTCCCCCTCCTGCTCCCTGCGATCTTCCGCCGCCGGCCGTTCAGTTCACTAGAGT TAAGCTTCTCCGGCCGACTGATACTCTGGCTCTCGGACATGCCTACCGCCTTGTAACAACTCAAGAGGTGGTGAAGGTTCTACGAGCGAAAAAGTCTGCC AAGATGAAGAAACAGCAGCAGGAGGATGATGCAGAATCAGTTGAAAAAACAGAGTCGGACGAACAGAGTTCAGATTTCCAGGTGTCCAGGAAATCCGATT CAGATAAGGACTTTCAGTTCCAGGCGACTAAACAAGAAAGACCTCGAAGAAGGGCAGCACCAGTTAACTCTGCAGTTCTGAGATCCAAGTTATGGCGGCC AACATTGCAGAGCATTTCCGAAGCTACCAGCTGA
AA sequence Show only first row Show all	>Lus10010708 pacid=23148716 polypeptide=Lus10010708 locus=Lus10010708.g ID=Lus10010708.BGIv1.0 annot-version=v1.0 MGNCQAIDAAALVIQHPCGKIERMYWQVTASEIMRLNPGHYVSLIIPLAPPPAPCDLPPPAVQFTRVKLLRPTDTLALGHAYRLVTTQEVVKVLRAKKSA KMKKQQQEDDAESVEKTESDEQSSDFQVSRKSDSDKDFQFQATKQERPRRRAAPVNSAVLRSKLWRPTLQSISEATS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60010			unknown protein		Lus10010708 [exp]	0	1
AT2G17650			AMP-dependent synthetase and l...		Lus10041826 [exp]	1.7	0.9593
AT2G17650			AMP-dependent synthetase and l...		Lus10041825 [exp]	2.4	0.9528
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10004919 [exp]	3.0	0.9488
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10027467 [exp]	6.0	0.9212
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10024415 [exp]	7.5	0.9234
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10024228 [exp]	7.7	0.9095
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10006413 [exp]	8.2	0.9329
AT3G06070			unknown protein		Lus10010508 [exp]	9.4	0.8704
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10013614 [exp]	10.2	0.9138
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10005557 [exp]	10.5	0.9185

Compare expression of checked genes

Lus10010708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.