Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70210 311 / 5e-105 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT2G22490 152 / 5e-43 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT5G65420 137 / 6e-38 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT5G67260 131 / 4e-35 CYCD3;2 CYCLIN D3;2 (.1) AT4G34160 130 / 9e-35 CYCD3;1 CYCLIN D3;1 (.1) AT5G10440 129 / 9e-35 CYCD4;2 cyclin d4;2 (.1) AT3G50070 124 / 2e-32 CYCD3;3 CYCLIN D3;3 (.1) AT4G03270 105 / 6e-26 CYCD6;1 Cyclin D6;1 (.1) AT4G37630 101 / 3e-24 CYCD5;1 cyclin d5;1 (.1.2) AT5G02110 75 / 7e-15 CYCD7;1 CYCLIN D7;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029194 [exp] 472 / 2e-168 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10019825 [exp] 134 / 5e-36 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1) Lus10014089 [exp] 132 / 5e-35 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1) Lus10019317 [exp] 116 / 2e-29 AT5G67260 338 / 4e-115 CYCLIN D3;2 (.1) Lus10011507 [exp] 115 / 4e-29 AT5G67260 343 / 7e-117 CYCLIN D3;2 (.1) Lus10024796 [exp] 113 / 2e-28 AT4G34160 231 / 4e-73 CYCLIN D3;1 (.1) Lus10018739 [exp] 113 / 3e-28 AT4G34160 237 / 3e-75 CYCLIN D3;1 (.1) Lus10039738 [exp] 107 / 2e-26 AT4G03270 243 / 1e-78 Cyclin D6;1 (.1) Lus10027874 [exp] 107 / 8e-26 AT4G34160 226 / 6e-70 CYCLIN D3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G146600 [exp] 372 / 7e-129 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.010G095200 [exp] 370 / 5e-128 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1) Potri.002G103500 [exp] 169 / 2e-49 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.005G157800 [exp] 168 / 2e-49 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.009G086700 [exp] 164 / 2e-47 AT1G70210 168 / 3e-49 CYCLIN D1;1 (.1) Potri.007G005700 [exp] 156 / 5e-45 AT1G70210 178 / 1e-53 CYCLIN D1;1 (.1) Potri.001G292300 [exp] 154 / 2e-43 AT2G22490 178 / 1e-52 Cyclin D2;1 (.1.2) Potri.014G005900 [exp] 145 / 1e-40 AT1G70210 181 / 1e-54 CYCLIN D1;1 (.1) Potri.004G032100 [exp] 134 / 2e-36 AT4G03270 216 / 6e-69 Cyclin D6;1 (.1) Potri.014G023000 [exp] 132 / 2e-35 AT4G34160 287 / 2e-94 CYCLIN D3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010709 pacid=23148713 polypeptide=Lus10010709 locus=Lus10010709.g ID=Lus10010709.BGIv1.0 annot-version=v1.0 ATGTCGGCGCTATCCTACGTCTCCGATTGCTTGTCGGACCTCCTCTGCGCGGAAGACTCATCCGAGATTTTCTCCGGCTATTCACCGGCAGCGGATTGCT CGTCGGACATCGACTCGTCTTCCTGTACGGAAGAATCAATCGCCACTTTCATCGTCGACGAGGACCGGTTCGTTCCCGGGTTCGATTACTTGGCCCGGTT CCAGACCCGGTGTCTGGATGCTTCCGCTAGAGAAGAAGCTGTTGCATGGATCCTCAAGGTGCAGGCATACTATAACTTCTCCCCTCTGACGGCGTACCTC GCCGTAAACTACCTGGATCGCTTCCTCTACTCTCGCCGTTTGCCGAAAACGGAGGGGTGGCCGTTGCAGCTGCTATCGGCGGCGTGCTTGTCGTTGGCCG CAAAGATGGAGGAGCCGATGGTTCCGACGCTGCTGGATCTGCAAGTCTCGAGCGCGAAGTTCTTGTTCGAGCCGAGGACGGTCGGAAGGATGGAGCTTCT GGTTCTGTCTGTGCTGGACTGGCGGCTGAGGTCCGTGACGCCGTTCAGTTTCATCGGATTCTTTGCATGGAAGCTGGATTCCACAGGGACTTATCCTGGG CTGCTCATCTCGAGAGCTACGGATATCATTTTGTCCAACATCCAAGAAACCAGCTTGGTGGAGTATCGGCCGTCGAGCATTGCCGCCGCCGCGGTTCTTT GTGCCGCCGACGAGATTCCGAGCTTGTCGCTTGCTAATCCGGAACACGCCGAGTCATGGTGTGATGGGCTAAGCAAAGAGAAAATATTGAGTTGTTACCG GCTAATGCAAGAGATGGAGGTGACCGGGCAAATCAAGAGAGGGGGCGTCGACACGCGGCGGCCCACGGGGGCGGCGGTTTTGCCGCCGGTGAGGGGAAGA AAGAGATCCATTACTATAGCAACCACTACCACTACTACTACGACGTCTGAATCAGTGTCATCTTCGTCGTCAACATCGTCATCGATCAAGAGGCAGAAAT TAAACAATTTCTTGTGGGTAGATGATGACAAAGGAAGCTCATAA
AA sequence Show only first row Show all	>Lus10010709 pacid=23148713 polypeptide=Lus10010709 locus=Lus10010709.g ID=Lus10010709.BGIv1.0 annot-version=v1.0 MSALSYVSDCLSDLLCAEDSSEIFSGYSPAADCSSDIDSSSCTEESIATFIVDEDRFVPGFDYLARFQTRCLDASAREEAVAWILKVQAYYNFSPLTAYL AVNYLDRFLYSRRLPKTEGWPLQLLSAACLSLAAKMEEPMVPTLLDLQVSSAKFLFEPRTVGRMELLVLSVLDWRLRSVTPFSFIGFFAWKLDSTGTYPG LLISRATDIILSNIQETSLVEYRPSSIAAAAVLCAADEIPSLSLANPEHAESWCDGLSKEKILSCYRLMQEMEVTGQIKRGGVDTRRPTGAAVLPPVRGR KRSITIATTTTTTTTSESVSSSSSTSSSIKRQKLNNFLWVDDDKGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Lus10010709 [exp]	0	1
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Lus10029194 [exp]	1.0	0.9280
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Lus10034828 [exp]	4.0	0.8520
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035387 [exp]	7.7	0.8363
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10005264 [exp]	8.2	0.8578
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Lus10026895 [exp]	8.7	0.8449
AT5G02190		EMB24, ATASP38,...	PROMOTION OF CELL SURVIVAL 1, ...		Lus10010854 [exp]	9.5	0.8103
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10019694 [exp]	9.9	0.8295
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Lus10040810 [exp]	11.6	0.8249
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040559 [exp]	13.9	0.8161
AT5G04420			Galactose oxidase/kelch repeat...		Lus10028825 [exp]	17.5	0.8111

Compare expression of checked genes

Lus10010709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.