Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70200 183 / 2e-52 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029195 [exp] 496 / 1e-175 AT1G70200 210 / 2e-62 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G146700 [exp] 186 / 1e-54 AT1G70200 202 / 3e-59 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10010710 pacid=23148747 polypeptide=Lus10010710 locus=Lus10010710.g ID=Lus10010710.BGIv1.0 annot-version=v1.0 ATGGCGGCAACTCCATCTCCACTCTCCGCCGCGCCCAGCATCTCTCCGGCGAATGCTCTTTCCTGTTCTCTTCTATTCCACTCACAAACTCTTTGGCACC TCACTCAATTCCAAACGCACTCGTCCTTATCCCTCTCGCAGCGATGCCGACGAACAAATCTCACAATCAATCATATCCTTCCGGAGAAACCACCGAGTAC CTTTCGTTGCTACGCGTTCAAGAAGGGAAAGACCGGAGGTCCCTCTGTCATACAGAGCCGCGATTTTGAGGACGAAGATGTAGATTTTGTTTTTCTGGAT GACGAGGATGGCGACGACTATGACGATGGCGAGGAAGACGACGATGAGACGATGTTGCCGTACGTGATGATGCAGAAGCGGCTAGCGAAGAAGCCCCAAG GATTCGGTGTGGGGGAAGTCTACGATACTTCTATTGAAGACAAGCTGCTCGAAGAAATTCAGCAGAGTCAAGTTGCTCAAGCTGCCAATGTTAATAACCT CAAGCACAATCCCATCAAGCCAATTATCAAGGAAGACGATTCAAAGAAGAAAGCTTCTGAAGCTGTAGCTAGTGGAATTAGGGTGCAGGTAAGCAACCTC CCAAAGAAAAGGAACGTCCAAAGGGATTTGAAATCAGCTTTCAAGGAGTTTCGTGGAATTGTTGATATAATTCCTGCTGTTTCTGGCAATATGAAGACCA AGGATCCGATTTGCAAAGGGTTTGCCTTTGTTGATTTCAAGTCCGAGATGGATGCAACAAGGTTTGTGAAACAGTTTTCTGGACAAAGCATAGCGTTTGG TAAGGTTGAGAAGCTGATAAAATGCAGGATTGCAAGCGCAAGGTCAAGCCGAGCATCTCAAGATGAATTGGCAGGGATCGATATGGATGATTCCTCGGCT GCTGAGGATGAGATCATAGAAATGCAACTGGTAGTAAATGAAACTAAAAGCAAGAAATCTATCAGTGTACCAGGGTTAAATAGTACTGTTGACAACAAGA AAGGTGTAAATGGATCATCATCATCATCATCTTCGAAGAAGAAACCAAAAATGGGGACTAAGAAGAGTAATGTTGCTACTAAAAACAAACCCAAGATGGC GATCCCGGGATCTGCTAAAAGGTTAAAGGTCAGGGAAAAAGCTGTGCTGACGGATGTCTTCAGTAAATACAGTTTGAAAGCTGCGGTTGCTTCTTCAAAG GAAGAAAGCTAG
AA sequence Show only first row Show all	>Lus10010710 pacid=23148747 polypeptide=Lus10010710 locus=Lus10010710.g ID=Lus10010710.BGIv1.0 annot-version=v1.0 MAATPSPLSAAPSISPANALSCSLLFHSQTLWHLTQFQTHSSLSLSQRCRRTNLTINHILPEKPPSTFRCYAFKKGKTGGPSVIQSRDFEDEDVDFVFLD DEDGDDYDDGEEDDDETMLPYVMMQKRLAKKPQGFGVGEVYDTSIEDKLLEEIQQSQVAQAANVNNLKHNPIKPIIKEDDSKKKASEAVASGIRVQVSNL PKKRNVQRDLKSAFKEFRGIVDIIPAVSGNMKTKDPICKGFAFVDFKSEMDATRFVKQFSGQSIAFGKVEKLIKCRIASARSSRASQDELAGIDMDDSSA AEDEIIEMQLVVNETKSKKSISVPGLNSTVDNKKGVNGSSSSSSSKKKPKMGTKKSNVATKNKPKMAIPGSAKRLKVREKAVLTDVFSKYSLKAAVASSK EES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70200			RNA-binding (RRM/RBD/RNP motif...		Lus10010710 [exp]	0	1
AT1G30610		EMB88, EMB2279	EMBRYO DEFECTIVE 88, EMBRYO DE...		Lus10023384 [exp]	1.0	0.9217
AT1G70200			RNA-binding (RRM/RBD/RNP motif...		Lus10029195 [exp]	6.6	0.9147
AT5G55580			Mitochondrial transcription te...		Lus10003775 [exp]	12.6	0.9108
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10029444 [exp]	13.6	0.9019
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10006037 [exp]	15.1	0.8840
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10003424 [exp]	16.0	0.9034
AT1G62780			unknown protein		Lus10032229 [exp]	16.4	0.9084
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10013083 [exp]	17.9	0.8955
AT2G43945			unknown protein		Lus10020220 [exp]	23.6	0.8308
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10007634 [exp]	27.2	0.8468

Compare expression of checked genes

Lus10010710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.