Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59990 636 / 0 RH22, EMB3108 RNA helicase 22, EMBRYO DEFECTIVE 3108, DEA(D/H)-box RNA helicase family protein (.1) AT4G09730 94 / 4e-20 RH39 RH39 (.1) AT2G40700 92 / 3e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G31970 89 / 2e-18 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT4G34910 88 / 5e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 88 / 5e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08610 86 / 3e-17 PDE340 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 85 / 3e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G77030 85 / 4e-17 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) AT1G55150 83 / 2e-16 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029196 [exp] 979 / 0 AT1G59990 671 / 0.0 RNA helicase 22, EMBRYO DEFECTIVE 3108, DEA(D/H)-box RNA helicase family protein (.1) Lus10015977 [exp] 95 / 2e-20 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015978 [exp] 94 / 2e-20 AT3G58570 535 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000848 [exp] 94 / 3e-20 AT2G42520 655 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027240 [exp] 93 / 1e-19 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015976 [exp] 93 / 2e-19 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 91 / 6e-19 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016207 [exp] 91 / 7e-19 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 91 / 7e-19 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G193800 [exp] 688 / 0 AT1G59990 631 / 0.0 RNA helicase 22, EMBRYO DEFECTIVE 3108, DEA(D/H)-box RNA helicase family protein (.1) Potri.005G198300 [exp] 95 / 3e-20 AT4G09730 743 / 0.0 RH39 (.1) Potri.003G098800 [exp] 91 / 4e-19 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 90 / 8e-19 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G196000 [exp] 89 / 3e-18 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G061900 [exp] 88 / 4e-18 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G083000 [exp] 86 / 3e-17 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G250700 [exp] 85 / 3e-17 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 85 / 3e-17 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.009G045300 [exp] 84 / 6e-17 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10010711 pacid=23148750 polypeptide=Lus10010711 locus=Lus10010711.g ID=Lus10010711.BGIv1.0 annot-version=v1.0 ATGCTTTTCCTTCATCGCTCTGCTCCAGTGCTTCATCTCTACAAGCTATCATCATCACCATCGCCGAAGATTATCTTCTCTCAAGTGTCACGAGCACACT CGTTTCTATCCGTTCCCTTTCCACTATCCAGAGAAGCTCGACGGTTCACTACAGCCGCCGCCGCCGTCTCCGATCCTACCCGCGGCGACGATACGTTCTT CGCCGAAGAAAGTGTTTCCTGGACTGCTCTAGGCCTCTCTGACACAATCTCTAGAGCTCTTTCCGATGCCGGATTCCAAAGACCGTCTCTTGTCCAGGCC GAGTCTATACCGTCGATTCTTTCAGGGAAGGATTCGGTGATTGCTGCAGAGACCGGCAGCGGGAAAACTCATTCCTATCTAGTTCCTCTGATTCATAAGC TATCTACTGGAAGAAGTAATGATTCCGGTTCTCCCTCCCGTGGAGTTTCTCTTGTTCTTTGTCCCAACGTTTTGCTGTGTGAACAAGTGGTTCGAATGGC GAATGGCCTCTGCGATGAGAATGGCGATCCACTTCTCAAAATTGCTGCTGTCTGTGGGAGGCAGGGATGGCCAGTTCATCAACCGGACATACTTGTGTCC ACTCCAGCTGCACTTCTAAATAGCATTGAACCGAAGAAGCAAAGGAAGTTGAGCTTCATTCGTGGAGTCAAATATGTGGTGTTTGATGAAGCAGACATGC TTCTCTGTGGCAGCTTCCAGAATCAAGTGATCCGTTTAATTAACATGTTCCGTTTCGACGAGAAAAATTTGTGTTGGACTAGCCAATCCCCAGCTGCTGC TTCTGCTGAAGTAGTAGAAGATTCTGAATCTCCCCCGGAGGAAGCATTGGAGGATGATGTAGAAGAAGCGCAAGGTGATATGGCGATGGCTGATGAGGAG GAAAACTTGGGGAGTATTGCTGAGGAGGATGAGGTGGTTGAAGAGGCAGCAAATGAAGCAGGTTCCATTCAGAAAAGGGGATGGAGGAGAGTTAAAAGGG TTTATAATCGGAGTAAGCAGTATATCTTCGTGGCAGCTACTCTTCCGGTTAACGGAAAGAAGACAGCTGGTGCAGTGTTGAAATGGATGTTTCCTGAGGC CAATTGGATTAATGGAAGCTACCTCCACTGCCACAATCCCAGATTGGAGCGGAGGTGGATTGAGGTTACAGTAGATAGCCAGGTGGATGCACTCATAGAG GCCTTGAAGCAAGGACATGAATCTGAAACGGCTGGTAGTAATGTTAGTCGAACTATGGTGTTTGCAAATACCGTTGAGGCTGTCGAAGCAGTAGCTGATA TACTGAAAAGAGCTGGGATTGAGTGTTACCGGTACCATAAGGAGGGATCTTTGGAAGAACGTGCAAGTACATTGGATGATTTCAGAGAGAAAGGTGGAAT CTTTGTCTGCACTGATGCTGCTGCTCGTGGAGTTGATATTCCGAATATCACACATGTTGTTCAGGCAGACTTTGCAACATCTGCTGTAGATTTCTTGCAT AGGGTTGGCCGCACAGGTCGAGCTGGTCAGTACGGTCTGGTTACTAGCCTGTACACCGATTTCAATCGAGATCTCGCCAATCGAGATCTTGTCTCTGCAA TTCGTGAAGCTGAGAGATTGGGGAACCCAGTGGAGACTGCGTTTAGCAGGAAAAGAAGCTTCAGAAACAAACTGAAGAAGAGAGGTAAACCGTTCAATAC GCTTTACCAAGAAGTTTGA
AA sequence Show only first row Show all	>Lus10010711 pacid=23148750 polypeptide=Lus10010711 locus=Lus10010711.g ID=Lus10010711.BGIv1.0 annot-version=v1.0 MLFLHRSAPVLHLYKLSSSPSPKIIFSQVSRAHSFLSVPFPLSREARRFTTAAAAVSDPTRGDDTFFAEESVSWTALGLSDTISRALSDAGFQRPSLVQA ESIPSILSGKDSVIAAETGSGKTHSYLVPLIHKLSTGRSNDSGSPSRGVSLVLCPNVLLCEQVVRMANGLCDENGDPLLKIAAVCGRQGWPVHQPDILVS TPAALLNSIEPKKQRKLSFIRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKNLCWTSQSPAAASAEVVEDSESPPEEALEDDVEEAQGDMAMADEE ENLGSIAEEDEVVEEAANEAGSIQKRGWRRVKRVYNRSKQYIFVAATLPVNGKKTAGAVLKWMFPEANWINGSYLHCHNPRLERRWIEVTVDSQVDALIE ALKQGHESETAGSNVSRTMVFANTVEAVEAVADILKRAGIECYRYHKEGSLEERASTLDDFREKGGIFVCTDAAARGVDIPNITHVVQADFATSAVDFLH RVGRTGRAGQYGLVTSLYTDFNRDLANRDLVSAIREAERLGNPVETAFSRKRSFRNKLKKRGKPFNTLYQEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10010711 [exp]	0	1
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10029196 [exp]	1.4	0.9251
AT4G09730		RH39	RH39 (.1)		Lus10017781 [exp]	5.1	0.8930
AT1G79050			recA DNA recombination family ...		Lus10026204 [exp]	5.3	0.8680
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Lus10036216 [exp]	5.7	0.8411
AT1G30960			GTP-binding family protein (.1...		Lus10032427 [exp]	6.5	0.8906
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031745 [exp]	6.6	0.8879
AT3G51140			Protein of unknown function (D...		Lus10041816 [exp]	8.8	0.8703
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10023548 [exp]	8.9	0.8781
AT4G36790			Major facilitator superfamily ...		Lus10041712 [exp]	11.4	0.7766
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009682 [exp]	13.0	0.8515

Compare expression of checked genes

Lus10010711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.